Dr. Harkins primarily studies how viruses, particularly coronaviruses like SARS-CoV-2, evolve and evade the immune system. His work includes analyzing mutations that allow these viruses to thrive, helping to shape vaccine development for better protection. Additionally, he investigates various medical procedures in gynecology, such as the effectiveness of minimally invasive surgeries and managing post-operative complications. By exploring patient satisfaction and the safety of different surgical techniques, he aims to enhance treatment options for women facing health challenges like uterine bleeding and endometriosis.
Key findings
In his 2025 study, Dr. Harkins identified 17 mutations in the SARS-CoV-2 Spike protein that help it escape immune detection, informing vaccine design.
His 2022 research into the Omicron variant found 13 unique mutations that enhance its ability to infect human cells, aiding in understanding its rapid spread.
87% of women remained satisfied with thermal balloon ablation for heavy menstrual bleeding after 7-10 years, but the need for further surgery increased from 9% to 21.6%.
Dr. Harkins reported a 4% complication rate for vaginal cuff dehiscence in total laparoscopic hysterectomy, showing the importance of surgical technique.
Frequently asked questions
Does Dr. Harkins study COVID-19?
Yes, Dr. Harkins researches how the COVID-19 virus mutates to evade the immune system and the implications for vaccine development.
What surgical procedures has Dr. Harkins researched?
He has researched minimally invasive surgeries, thermal balloon ablation for heavy menstrual bleeding, and hysterectomy techniques.
Is Dr. Harkins's work relevant to women experiencing heavy menstrual bleeding?
Yes, his research on treatment options like thermal balloon ablation and hysterectomy directly addresses concerns related to heavy menstrual bleeding.
What can we learn from Dr. Harkins's findings on viral mutations?
His findings enhance our understanding of how viruses evolve and inform public health strategies for vaccine development and outbreak management.
How does Dr. Harkins help improve surgical outcomes?
By analyzing patient satisfaction and complication rates, he provides insights that help enhance techniques and decision-making for gynecological surgeries.
Publications in plain English
Population-level toggling of T cell immune escape at human leukocyte antigen anchor residues in SARS-CoV-2 Spike proteins, in an ethnically diverse population region.
2025
PLoS computational biology
Ngandu NK, Fielding BC, van Heusden P, Mcinga K, Francis K +1 more
Plain English This study looked at how the SARS-CoV-2 virus changes to avoid being attacked by the immune system in a diverse group of people in South Africa. Researchers found that the virus made specific mutations in the Spike protein that helped it escape the immune response in 17 different ways, with 16 of those linked to recognized T cell targets. These findings are crucial because they could inform vaccine design by highlighting which viral areas need attention to remain effective against the virus.
Who this helps: This helps patients by improving vaccine strategies for better protection against COVID-19.
Selection analysis identifies unusual clustered mutational changes in Omicron lineage BA.1 that likely impact Spike function.
2022
bioRxiv : the preprint server for biology
Martin DP, Lytras S, Lucaci AG, Maier W, Grüning B +34 more
Plain English This study looked at specific mutations in the Omicron variant of COVID-19, particularly in the spike protein, which the virus uses to enter human cells. It found 13 unusual mutations that are mostly absent in other variants, and these changes could help the virus interact better with human cells, making it more effective at spreading. Understanding these mutations is important because they help explain why Omicron is spreading so quickly compared to earlier variants.
Who this helps: This research benefits public health officials and scientists working on strategies to combat COVID-19.
Conserved recombination patterns across coronavirus subgenera.
2022
Virus evolution
de Klerk A, Swanepoel P, Lourens R, Zondo M, Abodunran I +10 more
Plain English This study looked at how coronaviruses mix their genetic material through a process called recombination. The researchers found specific patterns that are similar among different types of coronaviruses—particularly at certain spots in their genetic code where recombination is more likely to happen. For example, they discovered that many recombination events tend to occur in areas with low levels of guanine and cytosine, as well as near important genes like the Spike protein, which is crucial for the virus's ability to infect cells. Understanding these patterns helps scientists predict how coronaviruses might evolve, which is important for developing vaccines and treatments.
Who this helps: This helps researchers and public health officials working to combat virus outbreaks.
Bowel perforation after placement of tubal occlusion contraceptive.
2015
Obstetrics and gynecology
Riley K, Beltran F, Stewart D, Harkins G
Plain English This study looked at the risks associated with a specific contraceptive method called the tubal occlusion contraceptive, which is used for female sterilization. It reported a case where a woman's contraceptive device was misplaced, leading to her experiencing severe pain and nausea, and ultimately resulting in a bowel perforation that required surgery. Though this complication is rare, it highlights the need for doctors to closely monitor patients for issues after the device is placed.
Who this helps: This helps patients considering tubal occlusion contraception and their doctors.
The head butler with design modification: a useful mountable shelf for the operating table in robotic surgery.
2014
Journal of robotic surgery
Tam T, Harkins G, Estes S
Plain English This study looked at a new version of a mountable shelf called the "head butler," used during robotic surgeries. The updated design protects patients from injury by preventing pressure on their shoulders, which can lead to nerve damage, and also helps keep surgical tools organized and secure. This is important because it enhances safety and efficiency in operating rooms, making surgeries smoother and reducing the risk of complications.
Who this helps: This helps patients undergoing robotic surgery.
Extensive recombination-induced disruption of genetic interactions is highly deleterious but can be partially reversed by small numbers of secondary recombination events.
2014
Journal of virology
Monjane AL, Martin DP, Lakay F, Muhire BM, Pande D +4 more
Plain English This study looked at how viruses can change and adapt through a process called recombination, which mixes their genetic materials. Researchers created two virus strains with a lot of genetic disruptions—182 points where the genetic information was altered—which made them almost non-infectious. However, when these altered viruses were mixed, they produced new, healthier viruses with only 2 to 6 disruptions that could replicate and infect much better than their parents.
Who this helps: This helps researchers and doctors understand viral evolution and improve treatments for viral infections.
Infiltration of bupivacaine local anesthetic to trocar insertion sites after laparoscopy: a randomized, double-blind, stratified, and controlled trial.
2014
Journal of minimally invasive gynecology
Tam T, Harkins G, Wegrzyniak L, Ehrgood S, Kunselman A +1 more
Plain English This study looked at whether injecting a local anesthetic called bupivacaine into small incision sites after laparoscopic surgery would help reduce pain for women undergoing gynecologic procedures. The researchers found that while women who received the bupivacaine reported slightly lower pain scores at different times after surgery, the difference was too small to be statistically significant. This matters because it suggests that injecting this anesthetic may not provide enough pain relief to justify its use after such surgeries.
Who this helps: This information is valuable for doctors and healthcare providers deciding on pain management methods for patients undergoing laparoscopic surgery.
JSLS : Journal of the Society of Laparoendoscopic Surgeons
Tam T, Harkins G, Dykes T, Gockley A, Davies M
Plain English Researchers studied how oxidized regenerated cellulose, a material used to stop bleeding during laparoscopic gynecologic surgery, can look like an infection (abscess) on scans. They found that in three patients, the material created confusion because it appeared similar to an abscess, which made diagnosing them more complicated. Clear communication about where this material is placed during surgery is crucial for doctors interpreting imaging tests and managing patients effectively.
Who this helps: This helps patients and doctors by improving diagnosis and treatment after surgery.
Minimally invasive hysterectomy at a university teaching hospital.
2014
JSLS : Journal of the Society of Laparoendoscopic Surgeons
Mitri M, Fanning J, Davies M, Kesterson J, Ural S +2 more
Plain English This study looked at how effective and safe minimally invasive surgery is for removing the uterus in women with non-cancerous conditions at a teaching hospital. Out of 537 patients, 98% had their surgery start with a minimally invasive method, and 96% completed it that way. The average surgery took 86 minutes, patients lost about 95 mL of blood, stayed in the hospital for just 1 day, and faced a 5% risk of major complications, showing that this approach can be done successfully with good outcomes.
Who this helps: This benefits patients undergoing hysterectomy, particularly those looking for less invasive options and a quicker recovery.
Long-term patient satisfaction with thermal balloon ablation for abnormal uterine bleeding.
2014
JSLS : Journal of the Society of Laparoendoscopic Surgeons
Penezic L, Riley K, Harkins G
Plain English This study looked at how satisfied women still are with thermal balloon ablation for heavy menstrual bleeding seven to ten years after the procedure. Researchers found that 87% of the surveyed women were satisfied, similar to 88% satisfaction in earlier studies, but the need for hysterectomy rose significantly from 9% to 21.6% over the longer follow-up period. This matters because while most women remain happy with the treatment years later, a higher number needed further surgery, indicating that some may not have lasting relief from heavy bleeding.
Who this helps: This helps patients suffering from abnormal uterine bleeding and their doctors in making informed treatment decisions.
Endometrial dye instillation: a novel approach to histopathologic evaluation of morcellated hysterectomy specimens.
2013
Journal of minimally invasive gynecology
Tam T, Harkins G, Caldwell T, Zaino R, Hazard D
Plain English This study looked at whether a blue dye could help doctors see and identify the inner lining of the uterus during surgery to remove it. They used a special dye in 12 patients, and the results showed that the dye effectively colored the endometrium, making it easier for pathologists to find it in the tissue samples taken during surgery. This finding matters because it could improve the accuracy of examining tissue after a hysterectomy, leading to better diagnosis and treatment plans.
Who this helps: This helps patients and their doctors by ensuring more accurate examination of uterine tissue.
Effects of electrosurgery and vaginal closure technique on postoperative vaginal cuff dehiscence.
2013
JSLS : Journal of the Society of Laparoendoscopic Surgeons
Fanning J, Kesterson J, Davies M, Green J, Penezic L +2 more
Plain English This study looked at how different surgical techniques used during hysterectomies affect the risk of a complication called vaginal cuff dehiscence, where the surgical closure of the vagina reopens after surgery. Researchers found that out of 463 patients who had a total laparoscopic hysterectomy, 17 (or 4%) experienced this complication, while none of the 147 patients who had laparoscopic-assisted vaginal hysterectomy had the same issue. This finding highlights that the way the vaginal closure is performed plays a significant role in preventing complications after surgery.
Who this helps: This benefits surgeons and patients undergoing hysterectomy, particularly those with complex cases.
Robotic-assisted laparoscopic trachelectomy: a case series and review of surgical technique.
2013
Journal of robotic surgery
Tam T, Harkins G, Davies M
Plain English This study looked at eight patients who had robotic-assisted laparoscopic surgery to remove the cervix after they had earlier surgery for pelvic issues. The average age of these patients was about 40, and the surgery took about 75 minutes with very little blood loss and no immediate complications. These findings are important because they show that this robotic approach is a safe and effective option for women who need this type of surgery while minimizing recovery time and risks.
Who this helps: This benefits women experiencing pelvic pain and other complications due to conditions like endometriosis.
Umbilical endometriosis in a woman with bicornuate uterus.
2012
Skinmed
Baird D, Klepeiss S, Wehler A, Harkins G, Anderson B
Plain English Researchers studied a 39-year-old woman who had a painful growth on her belly button that had been getting bigger over six months. After examining the bump and finding it was linked to her past condition of endometriosis, doctors removed it and confirmed it was umbilical endometriosis—a type of tissue that normally lines the uterus but was growing where it shouldn't be. This case is important because it highlights a unique manifestation of endometriosis that can occur in different parts of the body, helping identify similar cases in other patients.
Who this helps: This helps patients experiencing unusual symptoms related to endometriosis.
The spread of tomato yellow leaf curl virus from the Middle East to the world.
2010
PLoS pathogens
Lefeuvre P, Martin DP, Harkins G, Lemey P, Gray AJ +6 more
Plain English This study looked at how the Tomato yellow leaf curl virus (TYLCV) spread from the Middle East to countries around the world. Researchers found that TYLCV likely originated in the Middle East between the 1930s and 1950s and began spreading globally in the 1980s. Knowing where TYLCV started and how it moved is important because it helps us understand the risks of similar viruses spreading in the future, particularly in tomato production.
Who this helps: This information benefits farmers and agricultural officials trying to protect tomato crops from viral threats.
Patient satisfaction with thermal balloon ablation for treatment of menorrhagia.
2009
American journal of obstetrics and gynecology
Hazard D, Harkins G
Plain English This study looked at how satisfied women were after having a thermal balloon ablation (TBA) to treat heavy menstrual bleeding, known as menorrhagia. Out of 216 patients surveyed, 89% reported being satisfied with the results, with 37% experiencing no periods and 44% having very light bleeding after 3 to 5 years; only 9% needed further surgery like a hysterectomy. These findings show that TBA is an effective treatment option and helps ensure that women can feel confident about their choice in managing heavy periods.
Who this helps: This helps women dealing with heavy menstrual bleeding.
Omental herniation through a 3-mm umbilical trocar site: unmasking a hidden umbilical hernia.
2001
Journal of laparoendoscopic & advanced surgical techniques. Part A
Bergemann JL, Hibbert ML, Harkins G, Narvaez J, Asato A
Plain English The study looked at a case where a patient developed a hernia through a very small incision (3 mm) made during laparoscopic surgery. It was found that the patient had a pre-existing weakness in the abdominal wall, which allowed part of the stomach lining to push through a tear and come out of the small incision. This is important because it shows that even very small incisions can lead to serious complications if there are underlying defects, and doctors need to be more careful in checking for these weaknesses during surgery.
Who this helps: This helps patients who undergo laparoscopic surgeries, ensuring they receive better care and fewer complications.