JOHN DENNIE CRABTREE JR.

TULLAHOMA, TN

Research Active
Surgery NPI registered 21+ years 50 publications 2017 – 2026 NPI: 1053314427
MiceGenotypeTranscriptomeAntiviral AgentsGenetic VariationMicrobiotaGenomicsCell LineEpigenesis, GeneticIntellectual DisabilityHealth PersonnelAntibodies, Monoclonal, HumanizedUrinary Bladder NeoplasmsAutistic DisorderBCG Vaccine

Practice Location

1750 CEDAR LN
TULLAHOMA, TN 37388-4760

Phone: (931) 455-7779

What does JOHN CRABTREE research?

John Dennie Crabtree Jr. studies a range of medical issues that affect different patient populations. He investigates breast reconstruction options for mastectomy patients, analyzing how the timing of procedures can impact recovery and complications. He also delves into genetic research, examining variations in human DNA that can lead to better understanding and treatment of genetic diseases. Additionally, Crabtree explores respiratory infections, finding potential treatments for viruses that affect lung health. His work supports both physical health and mental well-being through interventions designed for individuals with intellectual disabilities, enhancing their ability to manage stigma and improve self-confidence.

Key findings

  • 11.3% of patients experienced skin necrosis after immediate breast reconstruction compared to 2.2% after delayed reconstruction, indicating lower complication rates for delayed procedures.
  • Researchers identified 26,115 unique genetic variations from 65 human genomes, improving the accuracy of genetic testing.
  • During periods of high wildfire smoke pollution, clinical visits for cardiopulmonary issues in Baltimore increased by 25.1% compared to similar previous years.
  • 38.5% of bladder cancer patients remained free of disease two years after treatment with a combination of Bacillus Calmette-Guérin and pembrolizumab.
  • 95% of participants in a digital self-advocacy program for individuals with intellectual disabilities were engaged throughout the sessions, showing strong acceptance and effectiveness.

Frequently asked questions

Does Dr. Crabtree study breast cancer and reconstruction?
Yes, he focuses on breast reconstruction techniques for patients post-mastectomy, evaluating the timing of procedures to minimize complications.
What treatments has Dr. Crabtree researched for respiratory infections?
He has researched antiviral treatments for respiratory viruses, including a new drug called PAV-431 that targets specific proteins involved in infections.
Is Dr. Crabtree's work relevant to patients with genetic diseases?
Yes, his research on genetic variations enhances the accuracy of genetic testing, benefiting patients with genetic conditions.
How does Dr. Crabtree help individuals with intellectual disabilities?
He develops interventions like the 'Standing up for Myself' program, which helps improve self-advocacy skills and boost confidence among individuals with intellectual disabilities.
What impact does Dr. Crabtree's research have on environmental health?
His studies on the effects of air pollution from sources like wildfires highlight health risks and promote the need for better air quality measures.

Publications in plain English

Effect on Timing of Free Flap Breast Reconstruction on Mastectomy Skin Necrosis.

2026

Journal of reconstructive microsurgery

Ahmed S, Crabtree J, Fallah KN, Rinne EJ, Hulsman L +5 more

Plain English
This study examined the timing of a specific type of breast reconstruction surgery called the DIEP flap, comparing immediate reconstruction done on the same day as a mastectomy to delayed reconstruction done later. They found that 11.3% of patients who had immediate reconstruction experienced skin necrosis (tissue death), compared to only 2.2% for those who had the delayed procedure, highlighting a significant difference. This matters because delaying the reconstruction can reduce complications and improve recovery for patients after a mastectomy. Who this helps: Patients undergoing mastectomies who may need breast reconstruction.

PubMed

Transvaginal Follicle Aspiration in Mares: A Description of Different Techniques and Comparison of Results Across Different OPU Clinics.

2025

Reproduction in domestic animals = Zuchthygiene

Cuervo-Arango J, Necchi D, Clutton-Brock A, Profaska M, Crabtree J +1 more

Plain English
This study looked at different methods for collecting eggs from female horses (mares) at five clinics to see which technique produced the best results. They found that clinics using a two-person approach recovered more eggs per mare—about 64% from those clinics compared to 53% from those using a single operator. This is important because improving the number of eggs can enhance breeding success in horses. Who this helps: This helps horse breeders and veterinarians by providing effective techniques for collecting eggs.

PubMed

Complex genetic variation in nearly complete human genomes.

2025

Nature

Logsdon GA, Ebert P, Audano PA, Loftus M, Porubsky D +63 more

Plain English
This study looked at 65 complete human genomes to understand complex genetic variations in our DNA. The researchers filled in many gaps in previous genetic data, resolving a total of 1,852 complex structural variants and identifying an impressive 26,115 unique variations in each individual. This work is important because it improves the accuracy of genetic testing and can lead to better understanding of genetic diseases. Who this helps: This benefits patients and doctors by providing more detailed genetic information for disease research and diagnosis.

PubMed

Author Correction: Complex genetic variation in nearly complete human genomes.

2025

Nature

Logsdon GA, Ebert P, Audano PA, Loftus M, Porubsky D +63 more

PubMed

Digital adaptation of the Standing up for Myself intervention in young people and adults with intellectual disabilities: the STORM feasibility study.

2024

Public health research (Southampton, England)

Scior K, Richardson L, Randell E, Osborne M, Bird H +19 more

Plain English
This study explored a digital version of a support program called "Standing Up for Myself," designed for young people and adults with intellectual disabilities to help them deal with stigma and improve their self-confidence. Researchers found that out of 22 participants, 21 started the program and remained involved after three months, with over 90% of the program being delivered as intended. Participants reported feeling more confident and better equipped to handle difficult situations, showing that this digital approach can be effective and accepted. Who this helps: This benefits individuals with intellectual disabilities, helping them gain confidence and resilience in facing stigma.

PubMed

Urinary bother, Urinalysis, and Two-Year Efficacy Follow-Up Results of Phase I Trial of Intravesical Bacillus Calmette-Guérin Combined with Intravenous Pembrolizumab in Recurrent or Persistent High-Grade Non-Muscle-Invasive Bladder Cancer after Previous Bacillus Calmette-Guérin Treatment.

2024

Clinical genitourinary cancer

Montgomery J, Lybbert D, Sana S, El-Zawahry A, Peabody J +11 more

Plain English
This study focused on patients with high-grade non-muscle-invasive bladder cancer who had previously received Bacillus Calmette-Guérin (BCG) treatment. Researchers evaluated the effectiveness and side effects of combining BCG with another drug called pembrolizumab over two years. The findings showed that 38.5% of patients remained free of disease after two years, and 92.3% were still alive, with no increase in urinary problems reported. Who this helps: This benefits patients with persistent bladder cancer by offering a potentially effective treatment option.

PubMed

A pan-respiratory antiviral chemotype targeting a transient host multi-protein complex.

2024

Open biology

Michon M, Müller-Schiffmann A, Lingappa AF, Yu SF, Du L +52 more

Plain English
Researchers have developed a new antiviral drug called PAV-431 that targets specific proteins in the human body involved in respiratory infections. In lab tests, this drug successfully worked against various viruses that cause respiratory diseases, including serious ones like the coronavirus and respiratory syncytial virus. This is important because it offers a promising new way to treat these illnesses without harming healthy cells. Who this helps: This benefits patients suffering from respiratory viral infections.

PubMed

Probenecid Inhibits Human Metapneumovirus (HMPV) Replication In Vitro and in BALB/c Mice.

2024

Viruses

Bergeron HC, Crabtree J, Nagy T, Martin DE, Tripp RA

Plain English
Researchers studied the effects of a drug called probenecid on human metapneumovirus (HMPV), which can cause serious respiratory infections. They found that probenecid was effective at stopping HMPV from replicating in lab cells and in mice. Specifically, doses of 0.5 micromolar or higher showed significant inhibition in cells, while doses between 2 and 200 mg/kg reduced the virus in mice. This matters because it indicates that probenecid could be a potential treatment option for HMPV infections, for which there is currently no specific antiviral medication. Who this helps: This helps patients with HMPV infections and their doctors.

PubMed

Complex genetic variation in nearly complete human genomes.

2024

bioRxiv : the preprint server for biology

Logsdon GA, Ebert P, Audano PA, Loftus M, Porubsky D +63 more

Plain English
This study looked at the complete genetic information of 65 diverse human genomes to better understand genetic variations and build a more accurate reference for human DNA. Researchers found and accurately mapped thousands of complex structural variations in our genomes, which are important for understanding how genes can differ from person to person. This improved understanding can help in identifying genetic links to diseases and enhancing the precision of genetic testing. Who this helps: This benefits patients and doctors by improving genetic testing for better disease diagnosis and treatment.

PubMed

Polluted Air from Canadian Wildfires and Cardiopulmonary Disease in the Eastern US.

2024

JAMA network open

Maldarelli ME, Song H, Brown CH, Situt M, Reilly C +11 more

Plain English
This study looked at how smoke from wildfires in Canada affects heart and lung health in people living in the Eastern US, specifically Baltimore. Researchers found that during certain days with high pollution levels, there were 25.1% of clinical visits for cardiopulmonary issues compared to 22.3% during similar days in previous years, indicating a significant increase in health problems on those polluted days. This matters because it highlights the health risks associated with air pollution from distant wildfires, reinforcing the need for better air quality measures. Who this helps: This helps patients with heart and lung diseases, particularly those living in areas affected by wildfire smoke.

PubMed

A Pan-Respiratory Antiviral Chemotype Targeting a Host Multi-Protein Complex.

2023

bioRxiv : the preprint server for biology

Michon M, Müller-Schiffmann A, Lingappa AF, Yu SF, Du L +52 more

Plain English
This study looked at a new antiviral drug called PAV-431, which was tested against six different families of viruses that cause respiratory illnesses in people. The researchers found that PAV-431 works effectively in lab models and in animals, specifically helping with viruses like Porcine Epidemic Diarrhea Virus and Respiratory Syncytial Virus. This matters because it suggests a new way to treat respiratory viral infections by targeting specific proteins involved in how these viruses operate in the body. Who this helps: Patients with respiratory viral infections.

PubMed

The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain.

2023

Nucleic acids research

Ament SA, Adkins RS, Carter R, Chrysostomou E, Colantuoni C +24 more

Plain English
This research developed a comprehensive online archive called the Neuroscience Multi-Omic Archive (NeMO Archive) that stores genetic data from over 50 million brain cells. The project aims to make this data easily accessible for researchers studying the structure and function of the brain, helping them analyze information from both humans and animals to better understand brain cell types and behaviors. It matters because it promotes collaboration and innovation in brain research by providing valuable resources that researchers can use to explore neurological conditions. Who this helps: This helps researchers and scientists studying brain health and diseases.

PubMed

Standing up for Myself (STORM): Adapting and piloting a web-delivered psychosocial group intervention for people with intellectual disabilities.

2023

Research in developmental disabilities

Scior K, Richardson L, Osborne M, Randell E, Roche H +11 more

Plain English
The STORM program was created to help people over 16 with intellectual disabilities manage stigma and improve their well-being. In response to the Covid-19 pandemic, researchers adapted the program for online delivery and found that 95% of the 22 participants stayed engaged throughout the sessions, with 91% attending at least three out of five sessions. This means that with the right resources, people with intellectual disabilities can successfully participate in online group programs aimed at boosting their confidence and community engagement. Who this helps: This helps people with intellectual disabilities and the professionals who support them.

PubMed

The Hypervariable Tpr Multigene Family of Theileria Parasites, Defined by a Conserved, Membrane-Associated, C-Terminal Domain, Includes Several Copies with Defined Orthology Between Species.

2023

Journal of molecular evolution

Palmateer NC, Munro JB, Nagaraj S, Crabtree J, Pelle R +4 more

Plain English
This study focused on a group of genes in the Theileria parva parasite, which causes East Coast fever in cattle. Researchers discovered three new genes in a family called the Tpr genes, which play a likely role in how the parasite interacts with its host. They found that genes within a specific region of the parasite's genome are more similar to each other than those found elsewhere, suggesting a strong connection between these genes and the parasite’s survival. This matters because understanding these genes could help in creating better treatments or vaccines against the disease. Who this helps: This helps cattle farmers and veterinarians dealing with East Coast fever.

PubMed

Multifaceted Approach to Evaluation in a Pediatric and Adolescent Gynecology Rotation for Medical Students.

2022

Journal of pediatric and adolescent gynecology

Solotke MT, Crabtree J, Cron J, Kallen A, Encandela J +1 more

Plain English
This study looked at how a new rotation in pediatric and adolescent gynecology affected medical students' clinical knowledge and skills. After completing the four-week program, students improved their knowledge from an average score of 67% to 75%, and all clinical skills assessed showed significant improvement. This matters because it demonstrates that focused clinical training can effectively enhance learning, which may help better prepare future doctors. Who this helps: This benefits medical students and ultimately the patients they will care for.

PubMed

ACE2-IgG1 fusions with improvedandactivity against SARS-CoV-2.

2022

iScience

Iwanaga N, Cooper L, Rong L, Maness NJ, Beddingfield B +14 more

Plain English
This research looked at a new type of treatment for COVID-19 that uses a modified version of the ACE2 protein to block the virus from entering cells. They found that their improved version, called MDR504 hACE2-Fc, was more effective at neutralizing the virus and had better lasting effects in the lungs than previous versions. This is important because it could lead to better treatments or preventive measures against COVID-19 and its variants. Who this helps: This helps patients with COVID-19 and doctors treating them.

PubMed

Recurrent Respiratory Syncytial Virus Infection in a CD14-Deficient Patient.

2022

The Journal of infectious diseases

Besteman SB, Phung E, Raeven HHM, Amatngalim GD, Rumpret M +21 more

Plain English
This study focused on a patient with a rare genetic condition that results in the absence of a protein called CD14, which is important for immune responses. Researchers found that this patient's lack of CD14 led to repeated infections with the respiratory syncytial virus (RSV), although the virus itself could still replicate normally in the patient's cells. This finding highlights how CD14 is crucial for the immune system to effectively respond to RSV, which could help in understanding and treating similar cases. Who this helps: This helps patients with CD14 deficiencies and doctors treating recurrent RSV infections.

PubMed

'Standing up for Myself' (STORM): Development and qualitative evaluation of a psychosocial group intervention designed to increase the capacity of people with intellectual disabilities to manage and resist stigma.

2022

Journal of applied research in intellectual disabilities : JARID

Scior K, Cooper R, Fenn K, Poole L, Colman S +7 more

Plain English
This study looked at a program called STORM, which was created to help people aged 16 and older with intellectual disabilities deal with stigma in their lives. Over five sessions, 67 participants in various groups reported feeling more confident and connected, with many expressing a desire to advocate for themselves. The program also helped them process difficult feelings and experiences, though its effectiveness varied based on their existing self-advocacy skills. Who this helps: This benefits individuals with intellectual disabilities by equipping them with skills to manage stigma.

PubMed

Making Common Fund data more findable: catalyzing a data ecosystem.

2022

GigaScience

Charbonneau AL, Brady A, Czajkowski K, Aluvathingal J, Canchi S +37 more

Plain English
The study focused on improving how researchers can find biomedical data from various programs funded by the National Institutes of Health. It found that a new system called the Crosscut Metadata Model (C2M2) allows data from 11 different programs to be organized and easily searchable without the need for data owners to change how they store their data. This is important because it makes valuable research information more accessible, helping to speed up scientific discoveries. Who this helps: This benefits researchers and scientists working with biomedical data.

PubMed

Spatial working memory, not IQ or executive function, discriminates early psychosis and clinically vulnerable creative individuals.

2021

Early intervention in psychiatry

Crabtree J, Hudson JL, Brockman R, Newton-John T

Plain English
This study compared the cognitive abilities of people experiencing early psychosis, those at risk for psychosis who are also creative, and some control groups. The researchers found that spatial working memory, a specific type of mental function, was the best way to distinguish individuals with early psychosis from both creative and non-creative individuals. Importantly, 21 people in the early psychosis group showed significant differences in spatial working memory compared to the other groups, highlighting it as a key factor in understanding early psychosis and supporting creative individuals who may be at risk. Who this helps: This benefits patients, especially young creative individuals who may be showing early signs of psychosis.

PubMed

HMPDACC: a Human Microbiome Project Multi-omic data resource.

2021

Nucleic acids research

Creasy HH, Felix V, Aluvathingal J, Crabtree J, Ifeonu O +8 more

Plain English
The study focused on the Human Microbiome Project, which investigated the tiny organisms living in and on the human body, looking at both healthy individuals and those with diseases. The project collected over 48 terabytes of data from various studies, creating a centralized resource for researchers to access and analyze this information more easily. This is important because it helps scientists understand how these microbes affect our health, potentially leading to better healthcare solutions in the future. Who this helps: Researchers and healthcare professionals working to improve patient health.

PubMed

Phase I trial of intravesical Bacillus Calmette-Guérin combined with intravenous pembrolizumab in recurrent or persistent high-grade non-muscle-invasive bladder cancer after previous Bacillus Calmette-Guérin treatment.

2021

World journal of urology

Alanee S, Sana S, El-Zawahry A, Peabody J, Pearce T +7 more

Plain English
This study looked at the safety and effectiveness of combining two cancer treatments, Bacillus Calmette-Guérin (BCG) and pembrolizumab, in patients with high-grade bladder cancer that kept coming back after previous BCG treatment. Out of the 13 patients treated, 9 (or 69%) had no signs of cancer after three months. This matters because it shows that this treatment combination is safe and can potentially help many patients gain relief from their cancer. Who this helps: Patients with recurrent bladder cancer.

PubMed

Mutagenesis of human genomes by endogenous mobile elements on a population scale.

2021

Genome research

Chuang NT, Gardner EJ, Terry DM, Crabtree J, Mahurkar AA +4 more

Plain English
This study looked at how certain mobile elements in human DNA can cause changes, or mutations, in our genes. Researchers analyzed nearly 58,000 human genomes and found over 104,000 unique instances of these mobile elements. This is important because it helps us understand how these mobile elements can influence genetics, possibly leading to diseases and other biological effects. Who this helps: This benefits researchers and doctors by improving knowledge of genetic mutations and their potential link to diseases.

PubMed

A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex.

2021

Nature

Yao Z, Liu H, Xie F, Fischer S, Adkins RS +78 more

Plain English
This study looked at over 500,000 individual cells from the mouse primary motor cortex, which is important for movement. Researchers created a detailed map identifying more than 56 different types of brain cells, including specific types of neurons, and found many associated marker genes that help define these cells. This work is important because it provides valuable information that can guide scientists in targeting specific cell types for further research, which can improve our understanding of brain function and potential treatments for neurological conditions. Who this helps: This helps researchers and doctors working on brain-related diseases.

PubMed

Establishing a Pediatric and Adolescent Gynecology Subinternship for Medical Students.

2020

Journal of pediatric and adolescent gynecology

Solotke MT, Crabtree J, Encandela J, Vash-Margita A

Plain English
Researchers developed a specialized program for medical students focused on pediatric and adolescent gynecology (PAG) to better prepare them for caring for young female patients. Currently, there are only 3 PAG programs in North America compared to hundreds in other areas like maternal fetal medicine, indicating a significant training gap. This new 4-week training program offers hands-on clinical experiences and learning activities, which will help improve medical education and ultimately lead to better healthcare for young patients. Who this helps: Patients, particularly young females seeking gynecological care.

PubMed

A Mitochondrial Micropeptide Is Required for Activation of the Nlrp3 Inflammasome.

2020

Journal of immunology (Baltimore, Md. : 1950)

Bhatta A, Atianand M, Jiang Z, Crabtree J, Blin J +1 more

Plain English
This study focused on a tiny protein, called mitochondrial micropeptide-47 (Mm47), which plays an essential role in the body's immune response. Researchers found that when they removed Mm47 from immune cells in mice, the cells could not activate a key immune system component known as the Nlrp3 inflammasome, but other inflammasomes continued to function. This finding is significant because it highlights how this small peptide is crucial for fighting infections and maintaining immunity. Who this helps: This benefits researchers and doctors working on treatments for immune-related diseases.

PubMed

Strains used in whole organism Plasmodium falciparum vaccine trials differ in genome structure, sequence, and immunogenic potential.

2020

Genome medicine

Moser KA, Drábek EF, Dwivedi A, Stucke EM, Crabtree J +29 more

Plain English
This study looked at different strains of the malaria parasite, Plasmodium falciparum, used in vaccine trials and how their genetic differences affect vaccine effectiveness. Researchers found significant genetic variations, with tens of thousands of differences between the main vaccine strain (NF54) and other strains from Brazil, Guinea, and Cambodia. Understanding these differences matters because they can influence how well a vaccine protects against malaria, especially in different regions of the world. Who this helps: This helps patients in malaria-endemic areas by improving vaccine strategies.

PubMed

Staff training in positive behaviour support for behaviour that challenges in people with intellectual disability: cost-utility analysis of a cluster randomised controlled trial.

2020

BJPsych open

Hunter RM, Vickerstaff V, Poppe M, Strydom A, King M +6 more

Plain English
This study looked at the impact of training staff in a method called positive behaviour support (PBS) for people with intellectual disabilities who exhibit challenging behaviors. Over three years, the training led to a slight increase in quality of life, adding 0.175 quality-adjusted life years (QALYs) per participant. While the cost of training was around £1,598 per person plus additional healthcare costs of £399, there is an 85% chance this approach is cost-effective compared to standard treatment. However, the training did not show clear clinical benefits. Who this helps: This research helps healthcare providers and organizations working with individuals with intellectual disabilities.

PubMed

A comprehensive non-redundant gene catalog reveals extensive within-community intraspecies diversity in the human vagina.

2020

Nature communications

Ma B, France MT, Crabtree J, Holm JB, Humphrys MS +2 more

Plain English
This research focused on creating a detailed gene catalog specifically for the bacteria found in the human vagina, called VIRGO, which contains 950,000 unique genes. The study analyzed 1,507 vaginal samples and found a significant amount of genetic diversity among the bacteria, which varies both within individual women and across different groups. Understanding this diversity is important because it can help improve our knowledge of how vaginal microorganisms affect women's health and reproductive issues. Who this helps: This benefits women’s health researchers and healthcare providers.

PubMed

The TRUST Principles for digital repositories.

2020

Scientific data

Lin D, Crabtree J, Dillo I, Downs RR, Edmunds R +14 more

Plain English
The paper discusses the importance of trustworthy digital repositories, which are online places where data is stored and accessed. The authors emphasize that these repositories need to prove that they can securely manage and provide reliable data. This is crucial as society heavily relies on digital information for various needs, ensuring that the data we use is safe and accurate. Who this helps: This helps patients and researchers who depend on reliable medical data.

PubMed

Novel ACE2-IgG1 fusions with improvedandactivity against SARS-CoV2.

2020

bioRxiv : the preprint server for biology

Iwanaga N, Cooper L, Rong L, Beddingfield B, Crabtree J +3 more

Plain English
This study looked at a new type of protein designed to fight the virus that causes COVID-19. Researchers created a special version of a protein that helps block the virus from entering cells, which lasted much longer in the body—about 145 hours—and worked better to neutralize the virus. In tests on mice, this new protein significantly reduced COVID-19 infections. Who this helps: This helps patients at risk of severe COVID-19.

PubMed

Anxiety and Adverse Life Events in Professional Creative and Early Psychosis Populations.

2020

Psychiatry

Crabtree J, Hudson JL, Newton-John T

Plain English
This study looked at how anxiety and difficult life experiences affect creative individuals and those experiencing early signs of psychosis. Researchers found that creative people often have higher levels of anxiety, and both groups showed similar responses to past traumas like childhood abuse, which could help identify those at risk for developing psychosis. Understanding these connections is crucial because it can lead to new ways to support people who are both creative and facing mental health challenges. Who this helps: Patients, especially those in creative fields at risk of early psychosis.

PubMed

Capture-based enrichment of Theileria parva DNA enables full genome assembly of first buffalo-derived strain and reveals exceptional intra-specific genetic diversity.

2020

PLoS neglected tropical diseases

Palmateer NC, Tretina K, Orvis J, Ifeonu OO, Crabtree J +12 more

Plain English
This study focused on the genetics of Theileria parva, a parasite that affects cattle and is carried by ticks. Researchers successfully built almost complete genomes for T. parva strains from both cattle and African Cape buffalo, revealing a significant amount of genetic variation—54,000 differences in the cattle strains and a unique buffalo strain with 25 new potential genes. This is important because it helps in the development of better vaccines that can target these varied strains more effectively. Who this helps: This benefits cattle farmers and veterinarians working to control the disease.

PubMed

Interactive exploratory data analysis of Integrative Human Microbiome Project data using Metaviz.

2020

F1000Research

Wagner J, Kancherla J, Braccia D, Matsumara J, Felix V +3 more

Plain English
This study looked at how data from the Integrative Human Microbiome Project (iHMP) can be analyzed to understand the relationship between gut bacteria and human health. Researchers developed a tool called Metaviz to help visualize and analyze this data, focusing on two specific datasets. They showed that using this tool makes it easier to see important differences in bacteria levels, which can provide insights into how these microbial communities affect health. Who this helps: This benefits researchers and doctors studying the relationship between gut bacteria and health.

PubMed

Generation of H7N9-specific human polyclonal antibodies from a transchromosomic goat (caprine) system.

2019

Scientific reports

Wu H, Fan Z, Brandsrud M, Meng Q, Bobbitt M +9 more

Plain English
This research focused on creating a new way to produce human antibodies using genetically modified goats. The scientists successfully developed a goat that can produce human antibodies and showed that these antibodies were effective in neutralizing H7N9 influenza viruses in lab tests. This matters because it provides a potentially faster and cheaper method to create valuable treatments and diagnostic tools for human health. Who this helps: This benefits patients needing antibody treatments for infections and doctors looking for effective diagnostic solutions.

PubMed

Improving access to genetic testing for adults with intellectual disability: A literature review and lessons from a quality improvement project in East London.

2019

American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics

Adlington K, Smith J, Crabtree J, Win S, Rennie J +3 more

Plain English
This study looked at how genetic testing can be better accessed for adults with intellectual disabilities. The researchers found that while advances in genetic research have improved understanding of these conditions, clear communication and ethical concerns still make it challenging to offer and discuss genetic testing. They developed a better system in East London to make genetic testing a routine part of care for these individuals. Who this helps: This helps patients with intellectual disabilities and their caregivers.

PubMed

Process evaluation of a randomised controlled trial of PBS-based staff training for challenging behaviour in adults with intellectual disability.

2019

PloS one

Bosco A, Paulauskaite L, Hall I, Crabtree J, Soni S +7 more

Plain English
This study looked at how effective training staff in Positive Behaviour Support (PBS) is for helping adults with intellectual disabilities who challenge behavior. The researchers interviewed 62 people involved in the trial and found that while staff thought positively of PBS, many faced difficulties in applying the training in their everyday work. Out of 108 reports, only 33 included all parts of the PBS approach, and overall, the quality of the PBS plans was considered weak, which means they likely won't lead to significant improvements in behavior. Who this helps: This research benefits caregivers and staff working with adults with intellectual disabilities by helping them improve the way they support those in their care.

PubMed

Comparing Intellectual and Memory Abilities of Older Autistic Adults with Typically Developing Older Adults Using WAIS-IV and WMS-IV.

2019

Journal of autism and developmental disorders

Tse VWS, Crabtree J, Islam S, Stott J

Plain English
This study looked at the cognitive and memory skills of older adults with autism compared to those without autism, specifically people over 50 years old. It involved 28 autistic adults and 29 typically developing adults; the researchers found that the autistic group struggled more with processing speed and visual working memory, while performing similarly in other areas. Understanding these differences is important because it helps to identify the specific cognitive challenges older autistic adults face, which can guide their support and care as they age. Who this helps: This helps older autistic adults and the caregivers and healthcare providers who support them.

PubMed

TwinBLAST: When Two Is Better than One.

2019

Microbiology resource announcements

Dunning Hotopp JC, Matsumura J, Bromley RE, Riley DR, Agrawal S +4 more

Plain English
This study looked at a tool called TwinBLAST, which helps scientists analyze genetic information more effectively by allowing them to compare two sets of data at once. It was found that TwinBLAST makes it easier to visualize and organize complex genetic structures. This is important because understanding these genetic variations can provide insights into how genes are transferred between organisms. Who this helps: Researchers studying genetics and gene transfer.

PubMed

Assessing Autism in Adults: An Evaluation of the Developmental, Dimensional and Diagnostic Interview-Adult Version (3Di-Adult).

2018

Journal of autism and developmental disorders

Mandy W, Clarke K, McKenner M, Strydom A, Crabtree J +4 more

Plain English
Researchers created a new interview tool called the 3Di-Adult to assess autism in adults. They tested it with 39 adults with autism and compared them to 29 people without autism and 20 people with other mental health conditions. The interview took about 38 minutes to complete and was found to be very reliable, effectively identifying autism 95% of the time while correctly recognizing non-autistic individuals 92% of the time. This is important because it offers a quick and trustworthy way to evaluate autism in adults, improving diagnosis and support. Who this helps: This helps patients with autism and healthcare professionals diagnosing them.

PubMed

'Suddenly the first fifty years of my life made sense': Experiences of older people with autism.

2018

Autism : the international journal of research and practice

Hickey A, Crabtree J, Stott J

Plain English
This study looked at the experiences of 13 people over 50 with autism, focusing on their diagnoses, social support, and aging. The researchers found that these individuals often felt different and struggled with loneliness, but finding out they had autism allowed them to understand their past challenges better. Support groups were very important for these individuals, helping them feel accepted and connected with others. Who this helps: This benefits older adults with autism and the people in their lives seeking to understand their experiences better.

PubMed

Clinical outcomes of staff training in positive behaviour support to reduce challenging behaviour in adults with intellectual disability: cluster randomised controlled trial.

2018

The British journal of psychiatry : the journal of mental science

Hassiotis A, Poppe M, Strydom A, Vickerstaff V, Hall IS +8 more

Plain English
This study looked at whether training staff in positive behavior support (PBS) could help reduce challenging behavior in adults with intellectual disabilities. Researchers found that the training did not lead to any significant changes in behavior after a year, with only a small average difference in behavior scores that wasn't considered meaningful (about -2.14 points). This matters because it indicates that the current method of staff training in PBS may not be effective and highlights the need to explore other ways to address challenging behaviors. Who this helps: This helps service providers and policymakers who support adults with intellectual disabilities.

PubMed

Positive behaviour support training for staff for treating challenging behaviour in people with intellectual disabilities: a cluster RCT.

2018

Health technology assessment (Winchester, England)

Hassiotis A, Poppe M, Strydom A, Vickerstaff V, Hall I +11 more

Plain English
This study looked at whether training staff in Positive Behaviour Support (PBS) can effectively reduce challenging behaviors in adults with intellectual disabilities. Out of 246 participants, the training did not lead to a significant reduction in challenging behaviors compared to usual care, with a small average difference in behavior scores not considered important (mean difference of -2.14). Even though the training was somewhat cost-effective, its benefits decreased over time, indicating that better methods are needed for handling challenging behaviors in these community services. Who this helps: This research benefits staff working in community services for adults with intellectual disabilities.

PubMed

Communication and bed reservation: Decreasing the length of stay for emergency department trauma patients.

2018

The American journal of emergency medicine

Huang D, Bastani A, Anderson W, Crabtree J, Kleiman S +1 more

Plain English
This study looked at ways to reduce the time trauma patients spend in the emergency department (ED) before getting admitted to the hospital. By improving communication between ED staff and trauma specialists and reserving extra beds, the average stay in the ED dropped from 389 minutes by over 164 minutes, meaning patients were treated faster. This is important because shorter ED stays can lead to better health outcomes and a more positive experience for patients. Who this helps: This helps trauma patients and the healthcare providers who care for them.

PubMed

Notch Signaling Regulates Mitochondrial Metabolism and NF-κB Activity in Triple-Negative Breast Cancer Cells via IKKα-Dependent Non-canonical Pathways.

2018

Frontiers in oncology

Hossain F, Sorrentino C, Ucar DA, Peng Y, Matossian M +12 more

Plain English
This study examined how a signaling pathway called Notch affects metabolism and survival in a type of breast cancer called triple-negative breast cancer (TNBC). Researchers found that when TNBC cells were exposed to a protein called Jagged1, it triggered a series of reactions that helped these cancer cells survive and grow. Specifically, Jagged1 activated certain proteins, leading to increased energy production and the expression of survival genes, which contributes to the toughness of cancer stem-like cells. Who this helps: This research benefits patients with triple-negative breast cancer by identifying potential new treatment options.

PubMed

Shoulder Dystocia and Neonatal Resuscitation: An Integrated Obstetrics and Neonatology Simulation Case for Medical Students.

2017

MedEdPORTAL : the journal of teaching and learning resources

Alphonso A, Pathy S, Bruno C, Boeras C, Emerson B +4 more

Plain English
This study looked at how medical students train to handle complex childbirth scenarios, specifically a condition called shoulder dystocia and the need for newborn resuscitation. Out of 54 third-year medical students who participated in simulation training, 91% felt the shoulder dystocia scenario matched their learning needs and improved their skills for risky deliveries, while 94% agreed the resuscitation training was suitable and helped them feel more prepared for real-life situations. This research is important because it shows that combining obstetrics and pediatrics training using simulations can effectively enhance students' confidence and readiness to manage critical health situations during childbirth. Who this helps: This helps medical students preparing for real-life deliveries and neonatal emergencies.

PubMed

Strains, functions and dynamics in the expanded Human Microbiome Project.

2017

Nature

Lloyd-Price J, Mahurkar A, Rahnavard G, Crabtree J, Orvis J +10 more

Plain English
This study examined the diversity and functions of microbes in the human body by analyzing a large collection of genetic data from 265 individuals, which included 1,631 new samples for a total of 2,355. The researchers found specific groups of microbes that vary depending on body sites and time, showing how some types of bacteria are more common in certain body areas and how they can change over time. This information helps us understand the unique microbial makeup of each person and its role in health and disease. Who this helps: This benefits patients and doctors by improving our understanding of how individual microbiomes affect health.

PubMed

Assessment of variation in microbial community amplicon sequencing by the Microbiome Quality Control (MBQC) project consortium.

2017

Nature biotechnology

Sinha R, Abu-Ali G, Vogtmann E, Fodor AA, Ren B +9 more

Plain English
The study looked at how consistent results are when analyzing the gut microbes from different sources, like human stool samples and artificial communities, across multiple labs. It found that the type of sample used had the biggest impact on variability, with different labs yielding different results based on how they handled and processed the samples. This matters because ensuring reliable and consistent data is crucial for making progress in understanding the human microbiome and its health effects. Who this helps: This helps researchers and scientists studying gut health.

PubMed

Erratum: Strains, functions and dynamics in the expanded Human Microbiome Project.

2017

Nature

Lloyd-Price J, Mahurkar A, Rahnavard G, Crabtree J, Orvis J +10 more

Plain English
This article corrects previous findings from the Human Microbiome Project, which studies the billions of microbes living in and on our bodies. The research is essential because understanding these microbes can improve our knowledge of health and disease, helping in areas like digestion and immune response. Who this helps: Patients needing better treatments for gut-related issues.

PubMed

Letters: In Your Own Words. Shock.

2017

JEMS : a journal of emergency medical services

Crabtree J

PubMed

Frequent Co-Authors

Victor Felix Ralph A Tripp Joshua Orvis Anup Mahurkar Owen White Andre Strydom Sergey Koren Adam M Phillippy Scott E Devine Anup A Mahurkar

Physician data sourced from the NPPES NPI Registry . Publication data from PubMed . Plain-English summaries generated by AI. Not medical advice.