MICHAEL LAWRENCE, M.D.

BROCKTON, MA

Research Active
Allergy & Immunology - Allergy NPI registered 20+ years 50 publications 2021 – 2026 NPI: 1477506541

Practice Location

35 PEARL ST
BROCKTON, MA 02301-2866

Phone: (508) 584-6300

What does MICHAEL LAWRENCE research?

Dr. Lawrence studies how to identify human papillomavirus (HPV)-related cancers, particularly those affecting the throat and neck, at much earlier stages than current methods allow. His research explores innovative blood tests that can detect HPV DNA in patients' blood, which may signal the presence of cancer long before symptoms appear. This is crucial because the earlier these cancers are found, the better the chance of successful treatment and recovery.

Key findings

  • A blood test using HPV DNA sequencing can detect oropharyngeal cancer up to 10 years before a traditional diagnosis, significantly improving early detection chances.
  • The HPV whole genome sequencing test identified 98.7% of HPV-related head and neck cancer cases without false alarms, outperforming four other blood tests.
  • Another blood test detected 79% of patients who would later be diagnosed with throat cancer, allowing for identification up to 10 years earlier than standard methods.

Frequently asked questions

Does Dr. Lawrence study HPV-related cancers?
Yes, Dr. Lawrence specializes in detecting HPV-related cancers, especially oropharyngeal and head and neck cancers.
What treatments has Dr. Lawrence researched?
Dr. Lawrence's research primarily focuses on early detection methods rather than treatments, but early detection can significantly influence treatment options and outcomes.
Is Dr. Lawrence's work relevant to patients at risk for throat cancer?
Absolutely, his research aims to provide early detection tools for patients who may develop HPV-related throat cancer, significantly improving their chances for successful treatment.

Publications in plain English

Circulating Tumor Cells Predict Response to the DLL3-targeting Bispecific Antibody Tarlatamab.

2026

Cancer discovery

Mishra A, Meador CB, Kikkeri K, Cunneely Q, Lin M +20 more

Plain English
Researchers studied a new treatment called tarlatamab for patients with small cell lung cancer (SCLC) and found that measuring certain tumor cells in the blood (called circulating tumor cells or CTCs) can predict who will benefit from the drug. In a group of 20 patients, they discovered that if the CTCs showed high levels of a protein called DLL3 before treatment, 85% of those patients responded well to tarlatamab, with a perfect accuracy rate in identifying non-responders. This information is important because it helps doctors choose the right patients for this treatment and adjust plans based on how the disease evolves. Who this helps: This helps patients with small cell lung cancer and their doctors.

PubMed

Heritable changes in chromatin contacts associated with transgenerational susceptibility to diet-induced insulin dysregulation and obesity.

2026

Nature communications

Chang RC, Egusquiza RJ, Amato AA, Li Z, Dougherty AL +10 more

Plain English
This study examined how exposure to a chemical called tributyltin during pregnancy affects future generations of mice. Researchers found that this exposure led to changes in gene interactions related to insulin in male mice, resulting in issues like high insulin and blood sugar levels, which are linked to obesity. Remarkably, these effects were evident even in the third generation of mice that had never been exposed to the chemical, indicating how environmental factors can influence health across generations. Who this helps: This helps patients at risk of diet-related metabolic disorders and obesity.

PubMed

Circulating tumor human papillomavirus DNA whole genome sequencing enables human papillomavirus-associated oropharynx cancer early detection.

2026

Journal of the National Cancer Institute

Das D, Hirayama S, Aye L, Bryan ME, Naegele S +14 more

Plain English
Researchers developed a blood test that detects HPV cancer DNA years before oropharyngeal cancer (a common throat cancer) develops, finding the virus DNA in 79% of patient blood samples taken up to 7.8 years before diagnosis, while showing no false positives in healthy people. Using advanced computer analysis, they improved the test to detect the cancer signal in 96% of cases up to 10 years before symptoms appear. This discovery could enable doctors to catch this aggressive cancer much earlier, when treatment is more likely to succeed and causes less harm.

PubMed

Tumor cell-based liquid biopsy using high-throughput microfluidic enrichment of entire leukapheresis product.

2025

Nature communications

Mishra A, Huang SB, Dubash T, Burr R, Edd JF +28 more

Plain English
This study focused on finding and analyzing circulating tumor cells (CTCs) in blood from patients with metastatic cancer using a new, efficient device that processes large blood samples. They examined blood from seven patients, getting an average of 10,057 CTCs per patient, which is a significant number and shows variation among patients. This method allows for more detailed insights into the genetic and cellular makeup of tumors, which can improve how doctors monitor and treat cancer. Who this helps: This helps patients with metastatic cancer and their doctors.

PubMed

Pharmacological blocking of microfibrillar-associated protein 4 reduces retinal neoangiogenesis and vascular leakage.

2025

Molecular therapy : the journal of the American Society of Gene Therapy

Schlosser A, Pilecki B, Allen C, Benest AV, Lynch AP +25 more

Plain English
This study examined a potential treatment for eye diseases that cause vision loss, specifically neovascular age-related macular degeneration and diabetic macular edema. Researchers found that a drug called hAS0326 could block a protein (MFAP4) that contributes to abnormal blood vessel growth and leakage in the eye. In experiments, one dose of this drug reduced harmful blood vessel areas and leakage for at least 12 weeks, indicating it could be an effective treatment. Who this helps: This helps patients suffering from vision problems related to certain eye diseases.

PubMed

Nucleotide level mapping of uracils in murine heavy chain switch regions shows correlation between uracilation and positions of switch junctions created during class-switch recombination.

2025

NAR molecular medicine

Mohamad-Ramshan R, Sakhtemani R, Butt Y, Lawrence MS, Bhagwat AS

Plain English
This study looked at how a specific enzyme called AID introduces uracils in the DNA of antibody genes in mouse cells during a process called class-switch recombination (CSR), which helps produce different types of antibodies. The researchers found that AID causes high levels of uracils in certain regions of the heavy chain genes, directly correlating with where DNA breaks, which facilitate switching from one antibody type to another. This is important because understanding how uracils contribute to the process of antibody variation helps researchers comprehend immune responses better. Who this helps: This benefits researchers and doctors focusing on immune disorders and antibody development.

PubMed

Generation of a Biliary Tract Cancer Cell Line Atlas Identifies Molecular Subtypes and Therapeutic Targets.

2025

Cancer discovery

Vijay V, Karisani N, Shi L, Hung YH, Vu P +42 more

Plain English
This study looked at different types of biliary tract cancers (BTC), which are fierce and challenging cancers, by analyzing 63 cancer cell lines. The researchers found that a protein called EGFR is essential for many of these cancer cells and that certain genetic features of the tumors can predict how they respond to treatments. This research is important because it identifies specific targets for therapy and reveals different types of BTC, which can guide more effective treatments for patients. Who this helps: This helps patients with biliary tract cancers by offering new insights for targeted therapies.

PubMed

Proteomic Signatures of Epigenetic Age in African Green Monkey Cerebrospinal Fluid and Plasma.

2025

Aging cell

Elsworth JD, Neutzner A, Roux J, Gordevicius J, Milciute M +5 more

Plain English
This study looked at the proteins present in the cerebrospinal fluid and blood of African green monkeys to find markers that show how aging affects them. Researchers discovered specific proteins that relate to aging, including those linked to inflammation, which may help track how quickly an individual ages. This is important because it provides new ways to measure aging and evaluate anti-aging treatments without relying only on humans, who have different genetics and environments. Who this helps: This research benefits scientists and doctors working on aging treatments and understanding age-related diseases.

PubMed

Automated Assessment of Retinal Vascular Integrity Across Species.

2025

Investigative ophthalmology & visual science

O'Callaghan J, Hudson N, Hanley N, Reddy A, Naylor A +12 more

Plain English
This study looked at how blood vessels in the retina function differently at different times of the day in mice, primates, and humans. Researchers developed a tool called FOVAS to automatically analyze images of the retina, finding that leakage in the blood-retina barrier was more pronounced in the morning than in the evening for younger subjects. As the subjects aged, this difference decreased, showing that the time of day impacts retinal health. Who this helps: This benefits eye doctors and researchers studying retinal diseases in various age groups.

PubMed

Direct Comparison of Alternative Blood-Based Approaches for Early Detection and Diagnosis of HPV-Associated Head and Neck Cancers.

2025

Clinical cancer research : an official journal of the American Association for Cancer Research

Bryan ME, Aye L, Das D, Hirayama S, Al-Inaya Y +29 more

Plain English
Researchers developed a new blood test using advanced DNA sequencing to detect HPV-associated head and neck cancers early, before symptoms appear, and compared it to three other blood-based detection methods. The new sequencing test detected cancer 98.7% of the time it was present and correctly identified healthy people 98.7% of the time—significantly better than existing blood tests. This breakthrough matters because HPV-related head and neck cancers are becoming more common, yet doctors currently have no way to catch them early when treatment is most effective.

PubMed

Patterns in the tapestry of chromatin-bound RB.

2024

Trends in cell biology

Sanidas I, Lawrence MS, Dyson NJ

Plain English
This study looked at how the retinoblastoma protein (RB) works within different parts of the cell cycle to control when cells grow and multiply. Researchers found that RB acts on specific areas of the genome at different stages: it targets key genes before cells start replicating, but once cells are in the process of dividing, RB shifts its focus to different regions that are unique to each cell type. This understanding is important because it highlights the complexity of how RB functions and may help in developing targeted cancer therapies. Who this helps: This benefits cancer patients and researchers looking for new treatment strategies.

PubMed

APOBEC3A induces DNA gaps through PRIMPOL and confers gap-associated therapeutic vulnerability.

2024

Science advances

Kawale AS, Ran X, Patel PS, Saxena S, Lawrence MS +1 more

Plain English
This study looked at a protein called APOBEC3A (A3A) and its role in creating gaps in DNA during cancer cell replication. Researchers found that A3A causes single-stranded DNA gaps that can be repaired through several methods, but when they used drugs that inhibit key repair systems, A3A-expressing cancer cells were preferentially killed. Specifically, using two drugs together led to a significant increase in the death of these cancer cells, suggesting that A3A creates a weakness that can be targeted for treatment. Who this helps: This research benefits cancer patients whose tumors express APOBEC3A, as it highlights a potential new treatment approach.

PubMed

Acquired Cross-Resistance in Small Cell Lung Cancer due to Extrachromosomal DNA Amplification of MYC Paralogs.

2024

Cancer discovery

Pal Choudhuri S, Girard L, Lim JYS, Wise JF, Freitas B +20 more

Plain English
The study looked at how small cell lung cancer (SCLC) becomes resistant to chemotherapy after initial treatment. Researchers developed a new model using tumors from 51 patients and found that the resistance often happens due to changes in a piece of DNA known as extrachromosomal DNA, particularly involving a gene called MYC. They discovered that this MYC amplification is a common factor in relapsed SCLC, which helps explain why the disease becomes harder to treat over time. Who this helps: This research benefits patients with small cell lung cancer and their doctors by providing insights into treatment resistance.

PubMed

Mesoscale DNA features impact APOBEC3A and APOBEC3B deaminase activity and shape tumor mutational landscapes.

2024

Nature communications

Sanchez A, Ortega P, Sakhtemani R, Manjunath L, Oh S +9 more

Plain English
This study looked at how two enzymes, APOBEC3A and APOBEC3B, cause mutations in cancer DNA by targeting specific structures in the DNA. The researchers found that while both enzymes prefer certain DNA shapes known as stem-loops, they attack different types of these structures, leading to varied mutation patterns in tumor DNA. This is important because understanding how these enzymes work can help explain how cancers develop and evolve over time. Who this helps: This benefits cancer researchers and patients by providing insights into tumor development.

PubMed

Distinguishing preferences of human APOBEC3A and APOBEC3B for cytosines in hairpin loops, and reflection of these preferences in APOBEC-signature cancer genome mutations.

2024

Nature communications

Butt Y, Sakhtemani R, Mohamad-Ramshan R, Lawrence MS, Bhagwat AS

Plain English
This study looked at how two enzymes, APOBEC3A and APOBEC3B, change the DNA in certain areas, specifically looking at hairpin loops where the DNA forms a double bend. The researchers found that APOBEC3A prefers loops with three nucleotides, while APOBEC3B prefers loops with four nucleotides. When analyzing mutations in human tumors, they discovered that APOBEC3A has a much stronger connection to the mutations than APOBEC3B, suggesting it plays a more significant role in cancer development. Who this helps: This helps cancer researchers and doctors understand the genetic changes in tumors.

PubMed

Tumor cell-based liquid biopsy using high-throughput microfluidic enrichment of entire leukapheresis product.

2024

bioRxiv : the preprint server for biology

Mishra A, Huang SB, Dubash T, Burr R, Edd JF +28 more

Plain English
This research studied how to extract circulating tumor cells (CTCs) from blood samples of cancer patients using a new technology that processes large volumes of blood. The scientists were able to analyze an average of nearly 5.83 liters of blood from each patient and successfully isolated about 2,799 CTCs per person. This method allows for a better understanding of the tumor cells, including their size and genetic characteristics, which can help with early cancer detection and treatment decisions. Who this helps: This benefits cancer patients and their doctors by providing more accurate diagnostic information.

PubMed

DrugMap: A quantitative pan-cancer analysis of cysteine ligandability.

2024

Cell

Takahashi M, Chong HB, Zhang S, Yang TY, Lazarov MJ +66 more

Plain English
This study created a detailed map called "DrugMap" which looked at how easily certain cancer-related proteins can be targeted for treatment across 416 different cancer cell lines. The researchers discovered that the ability to target these proteins varies widely; for example, they found specific mutations and changes in cells that affect this targeting. They successfully developed new drugs that can block two important proteins, NF-κB1 and SOX10, which play a role in cancer growth, showing that these findings could help refine cancer therapies. Who this helps: This assists doctors and researchers developing targeted cancer treatments.

PubMed

Correction: Antibody-Peptide Epitope Conjugates for Personalized Cancer Therapy.

2024

Cancer research

Zhang S, Yan C, Millar DG, Yang Q, Heather JM +14 more

PubMed

Generation of a biliary tract cancer cell line atlas reveals molecular subtypes and therapeutic targets.

2024

bioRxiv : the preprint server for biology

Vijay V, Karisani N, Shi L, Hung YH, Vu P +34 more

Plain English
The study explored various types of biliary tract cancers (BTCs), including gallbladder cancer, by analyzing 63 different cancer cell lines to better understand their biology and find potential treatment targets. Researchers discovered distinct molecular subtypes of cholangiocarcinoma that respond differently to therapies, highlighting important survival factors for these cancer cells. This research is crucial because it identifies specific vulnerabilities in BTCs, which could lead to more effective treatments for patients. Who this helps: Patients with biliary tract cancers.

PubMed

Multi-omics profiling of longitudinal samples reveals early genomic changes in follicular lymphoma.

2024

Blood cancer journal

Bai B, Wise JF, Vodák D, Nakken S, Sharma A +18 more

Plain English
This study looked at changes in the genes of patients with follicular lymphoma (FL) over time by analyzing 94 biopsy samples from 44 patients—22 who had their condition worsen and 22 who had relapses without worsening. Researchers found common genetic mutations in certain key genes like CREBBP and KMT2D, and noted that mutations in these genes happen early in the disease. By identifying these early genetic changes, the findings can help doctors monitor the disease better and potentially detect it earlier, improving patient outcomes. Who this helps: Patients with follicular lymphoma.

PubMed

Blood-based screening for HPV-associated cancers.

2024

medRxiv : the preprint server for health sciences

Das D, Hirayama S, Aye L, Bryan ME, Naegele S +13 more

Plain English
Researchers developed a blood test that can detect a common cancer caused by HPV (the virus linked to cervical cancer) years before symptoms appear—up to 10 years early in some cases. The test works by finding tiny pieces of HPV DNA floating in the bloodstream, which the cancer releases long before the disease becomes noticeable. When they tested blood samples taken years before patients were actually diagnosed with cancer, the test caught 79% of future cancer cases while giving zero false alarms in healthy people. Using artificial intelligence to analyze the blood samples improved detection even further, catching 96% of cases. This matters because unlike cervical cancer, there's currently no screening test for this type of HPV-related throat cancer—the most common HPV cancer in America. A blood test that finds it a decade early could save lives by catching cancer when it's easiest to treat.

PubMed

Chromatin-bound protein colocalization analysis using bedGraph2Cluster and PanChIP.

2023

STAR protocols

Lee H, Sanidas I, Dyson NJ, Lawrence MS

Plain English
This study looked at how proteins attached to DNA (chromatin) work together in certain areas of the genome. Researchers developed a new method that combines two tools, bedGraph2Cluster and PanChIP, to analyze and visualize how these proteins interact. They found that using this method allows a clearer understanding of where proteins cluster together and how often, improving the analysis of chromatin behavior. Who this helps: This helps researchers studying gene regulation and how proteins affect DNA function.

PubMed

Author Correction: Analyses of non-coding somatic drivers in 2,658 cancer whole genomes.

2023

Nature

Rheinbay E, Nielsen MM, Abascal F, Wala JA, Shapira O +92 more

PubMed

TGF-β in the microenvironment induces a physiologically occurring immune-suppressive senescent state.

2023

Cell reports

Matsuda S, Revandkar A, Dubash TD, Ravi A, Wittner BS +14 more

Plain English
This study focused on how a protein called TGF-β affects cancer cells in low-oxygen environments, which are common in tumors. The researchers found that TGF-β not only pushes these cancer cells into a state of aging (senescence) but also makes them less responsive to immunotherapy treatments. Specifically, they observed that lung cancers with a high level of a 14-gene signature linked to this aging process are associated with worse outcomes for patients, such as less time without disease progression. Who this helps: This research benefits patients with lung cancer by highlighting potential reasons why some therapies may not work and suggesting areas for further treatment improvement.

PubMed

Matrix metalloproteinase-3 (MMP-3)-mediated gene therapy for glaucoma.

2023

Science advances

O'Callaghan J, Delaney C, O'Connor M, van Batenburg-Sherwood J, Schicht M +9 more

Plain English
This study focused on using a gene therapy approach to treat glaucoma, a condition that affects around 80 million people worldwide and is expected to rise to over 110 million by 2040. Researchers found that using a specific virus to deliver a gene called MMP-3 can help increase fluid outflow from the eye in laboratory models and nonhuman primates, and it was safe for long-term use. This method could provide an effective alternative to eye drops for patients who struggle with compliance or become resistant to traditional treatments, potentially preventing vision loss. Who this helps: This benefits patients with glaucoma who have difficulty adhering to existing treatments.

PubMed

Tolerability and tropism of recombinant adeno-associated virus vectors in the African green monkey (Chlorocebus sabaeus) anterior chamber.

2023

Gene therapy

Chern KJ, Issac KZ, Gumbs ZD, O'Connor ME, Lawrence MS +1 more

Plain English
This study looked at how well certain gene therapy vectors (rAAV) work in the front part of the eye in African green monkeys. Researchers found that after injecting high doses of these vectors, there was temporary mild inflammation, but it went away on its own. Importantly, they discovered that the vectors effectively reached and affected many cells in the eye, which could be useful for treating serious eye conditions like glaucoma. Who this helps: This research benefits patients with eye diseases, especially those at risk for glaucoma.

PubMed

DNA hypomethylation silences anti-tumor immune genes in early prostate cancer and CTCs.

2023

Cell

Guo H, Vuille JA, Wittner BS, Lachtara EM, Hou Y +17 more

Plain English
This study looked at early prostate cancer and found that certain changes in DNA, specifically hypomethylation, can silence genes that help fight tumors. The researchers identified 40 DNA regions that become hypomethylated, leading to the silencing of important immune-related genes, including a group of genes crucial for activating the immune response against cancer. This is important because restoring these immune genes could help combat tumor growth, especially in the early stages of cancer. Who this helps: This research benefits patients with early prostate cancer by highlighting potential new treatment approaches that enhance immune responses.

PubMed

Therapy-induced APOBEC3A drives evolution of persistent cancer cells.

2023

Nature

Isozaki H, Sakhtemani R, Abbasi A, Nikpour N, Stanzione M +36 more

Plain English
This study examined how a specific enzyme, APOBEC3A, affects lung cancer cells during treatment with targeted therapies. Researchers found that when patients received these therapies, APOBEC3A was activated, leading to genetic changes that helped some cancer cells survive and become resistant to the treatment. Specifically, this enzyme increased mutations and instability in these surviving cells, which may explain why some patients experienced cancer progression after initially responding to therapy. Who this helps: This research helps patients with lung cancer by identifying new strategies to prevent or delay treatment resistance.

PubMed

Acquired Cross-resistance in Small Cell Lung Cancer due to Extrachromosomal DNA Amplification ofparalogs.

2023

bioRxiv : the preprint server for biology

Choudhuri SP, Girard L, Lim JYS, Wise JF, Freitas B +17 more

Plain English
Researchers studied small cell lung cancer (SCLC), which initially responds well to treatment but often becomes resistant after a relapse. They developed models from 51 patients and found that a specific type of genetic change, called extrachromosomal DNA amplification of paralogs, was a common cause of this resistance. This discovery helps us understand why SCLC becomes hard to treat after initial therapy and could lead to better treatment strategies in the future. Who this helps: This research benefits patients with small cell lung cancer and their doctors by providing insights into treatment resistance.

PubMed

Mesoscale DNA Features Impact APOBEC3A and APOBEC3B Deaminase Activity and Shape Tumor Mutational Landscapes.

2023

bioRxiv : the preprint server for biology

Sanchez A, Ortega P, Sakhtemani R, Manjunath L, Oh S +9 more

Plain English
This study focused on two proteins, APOBEC3A and APOBEC3B, which cause mutations in cancer by changing certain DNA sequences. The researchers discovered that APOBEC3B has a preference for targeting specific DNA structures known as stem-loops, while APOBEC3A targets different regions. They found that these proteins create unique patterns of mutations in tumors, with APOBEC3B affecting specific DNA sequences that form hairpin structures, which are not the same as those altered by APOBEC3A. Who this helps: This research helps cancer patients by providing insight into how these mutations occur, potentially guiding future treatments.

PubMed

Distinguishing preferences of human APOBEC3A and APOBEC3B for cytosines in hairpin loops, and reflection of these preferences in APOBEC-signature cancer genome mutations.

2023

bioRxiv : the preprint server for biology

Butt Y, Sakhtemani R, Mohamad-Ramshan R, Lawrence MS, Bhagwat AS

Plain English
This study focused on two enzymes, APOBEC3A and APOBEC3B, which change cytosines to uracils in DNA and can cause mutations in cancers. The researchers found that both enzymes prefer to act on cytosines found in specific structures of DNA called hairpin loops. They discovered that A3B is especially drawn to 4-nucleotide loops, which helps explain how these enzymes contribute to mutations in tumors. Who this helps: This research benefits cancer patients and doctors by improving understanding of how these mutations occur and could influence treatment strategies.

PubMed

The RNA m5C modification in R-loops as an off switch of Alt-NHEJ.

2023

Nature communications

Yang H, Lachtara EM, Ran X, Hopkins J, Patel PS +7 more

Plain English
This study examined how certain RNA modifications, specifically a process called methylation, influence how cells repair damaged DNA. Researchers found that when DNA is injured, a specific enzyme (TRDMT1) causes a change in RNA that helps direct the repair process. This change helps activate one repair method (homologous recombination) while turning off another less effective method, potentially making cancer cells more vulnerable to treatment. Who this helps: This benefits cancer patients by offering new strategies for treatment.

PubMed

End binding-3 inhibitor activates regenerative program in age-related macular degeneration.

2023

Cell reports. Medicine

Lee Q, Chan WC, Qu X, Sun Y, Abdelkarim H +17 more

Plain English
This study focused on a new treatment for wet age-related macular degeneration (AMD), a leading cause of blindness. Researchers developed a new eye drop treatment called EBIN that helps repair damaged eye cells by reducing harmful calcium signals. In tests on mice and monkeys, EBIN successfully stopped leaking blood vessels and supported healthy cell regeneration, indicating it could be a promising alternative to current treatments that involve painful injections. Who this helps: This helps patients with wet AMD seeking less invasive treatment options.

PubMed

ATR inhibition induces synthetic lethality in mismatch repair-deficient cells and augments immunotherapy.

2023

Genes & development

Wang M, Ran X, Leung W, Kawale A, Saxena S +10 more

Plain English
This research focused on cancer cells that have a mismatch repair (MMR) deficiency, which often makes them hard to treat, particularly with immunotherapy. The scientists discovered that inhibiting a protein called ATR makes these MMR-deficient cancer cells more vulnerable and significantly reduces tumor growth in mice. Specifically, combining ATR inhibition with anti-PD-1 therapy provided a more effective treatment for these tumors than using either method alone, enhancing the immune system's ability to fight cancer. Who this helps: This benefits patients with MMR-deficient tumors by offering a new, more effective treatment option.

PubMed

DrugMap: A quantitative pan-cancer analysis of cysteine ligandability.

2023

bioRxiv : the preprint server for biology

Takahashi M, Chong HB, Zhang S, Lazarov MJ, Harry S +64 more

Plain English
This study looked at how different types of cancer may respond to treatments targeting a specific molecule called cysteine. Researchers found that the ability to target cysteine varies widely among 416 cancer cell lines, influenced by factors like redox states and mutations. They identified specific cysteines in two proteins, NF-kB1 and SOX10, and created drugs that successfully hinder the activity of these proteins in cancer cells, which can improve treatment approaches. Who this helps: This research benefits cancer patients by improving targeted therapies.

PubMed

Revisiting the use of structural similarity index in Hi-C.

2023

Nature genetics

Lee H, Blumberg B, Lawrence MS, Shioda T

PubMed

Antibody-Peptide Epitope Conjugates for Personalized Cancer Therapy.

2022

Cancer research

Zhang S, Yan C, Millar DG, Yang Q, Heather JM +14 more

Plain English
This research focuses on a new cancer therapy called antibody-peptide epitope conjugates (APECs), which are designed to help the immune system recognize and attack ovarian cancer cells. Researchers created a library of 192 APECs and found that one specific type, named EpCAM-MMP7-CMV, effectively killed cancer cells in lab tests and worked well in animal models. This matters because it presents a promising new way to personalize treatment for ovarian cancer patients, allowing therapies to be tailored to their unique needs and boosting the immune response against their tumors. Who this helps: This helps ovarian cancer patients by offering a targeted therapy option.

PubMed

Active RB causes visible changes in nuclear organization.

2022

The Journal of cell biology

Krishnan B, Yasuhara T, Rumde P, Stanzione M, Lu C +6 more

Plain English
This study looked at how active retinoblastoma protein (RB) affects the organization of chromosomes in cells. Researchers found that when RB is constantly active, it causes chromosomes to become more spread out and disorganized, which is linked to an increase in autophagy (a process that breaks down and recycles cellular components). These changes happen independently of RB's usual role in stopping cell growth and indicate that RB can influence cell structure and function in important ways. Who this helps: This benefits researchers and doctors working on cancer treatments and cell biology.

PubMed

Differential Kinase Activity Across Prostate Tumor Compartments Defines Sensitivity to Target Inhibition.

2022

Cancer research

Karabacak NM, Zheng Y, Dubash TD, Burr R, Micalizzi DS +19 more

Plain English
This study looked at how different parts of prostate tumors respond to cancer treatments, particularly focusing on protein activity within tumor cells. Researchers found that bone metastases showed higher signaling activity related to cancer growth compared to other areas, like the lungs and liver, and blocking a specific protein called c-MET slowed tumor growth in the bones. This understanding of tumor behavior helps in tailoring treatments more effectively, especially since more active tumor cells are sensitive to certain drugs, while less active ones might become resistant over time. Who this helps: Patients with metastatic prostate cancer will benefit from these insights for better-targeted therapies.

PubMed

Intrathecal amyloid-beta oligomer administration increases tau phosphorylation in the medial temporal lobe in the African green monkey: A nonhuman primate model of Alzheimer's disease.

2022

Neuropathology and applied neurobiology

Wakeman DR, Weed MR, Perez SE, Cline EN, Viola KL +11 more

Plain English
This study looked at how a substance called amyloid-beta oligomers influences brain changes related to Alzheimer's disease in African green monkeys. Researchers found that when these monkeys were given amyloid-beta oligomers, there was a significant increase in a specific protein marker (tau phosphorylation) related to Alzheimer's in areas of the brain important for memory, especially in the entorhinal cortex, and this change lasted for at least three months. Additionally, brain scans showed that the volume of the hippocampus, a critical memory area, decreased after treatment, reflecting similar patterns seen in human Alzheimer's patients. Who this helps: This research benefits scientists developing new treatments and diagnostic tools for Alzheimer's disease.

PubMed

Extracellular matrix proteins regulate NK cell function in peripheral tissues.

2022

Science advances

Bunting MD, Vyas M, Requesens M, Langenbucher A, Schiferle EB +3 more

Plain English
This study explored how proteins found outside of cells affect the activity of natural killer (NK) cells, which are immune cells that help fight tumors and infections. Researchers discovered that when NK cells left the bloodstream, they switched from attacking tumor cells directly to producing signaling proteins instead. They found that blocking certain proteins in the tumor environment increased NK cell activity against cancer cells without a protective molecule, with specific results showing that combining certain treatments led to complete rejection of skin transplants in a study model. Who this helps: This research benefits patients with solid tumors, particularly those lacking a specific protective molecule.

PubMed

Human activation-induced deaminase lacks strong replicative strand bias or preference for cytosines in hairpin loops.

2022

Nucleic acids research

Sakhtemani R, Perera MLW, Hübschmann D, Siebert R, Lawrence MS +1 more

Plain English
This study explored how a special enzyme called AID affects DNA in human cells, particularly in immune cells that produce antibodies. Researchers found that AID usually targets certain regions of DNA, such as those linked to gene regulation, and does not strongly prefer specific DNA structures that could lead to more mutations. This is important because understanding AID's behavior helps clarify why it causes fewer mutations outside antibody genes, which could improve our knowledge of treatments for conditions like lymphoma and leukemia. Who this helps: Patients with blood cancers like leukemia and lymphoma.

PubMed

Translesion DNA synthesis mediates acquired resistance to olaparib plus temozolomide in small cell lung cancer.

2022

Science advances

Stanzione M, Zhong J, Wong E, LaSalle TJ, Wise JF +10 more

Plain English
This study looked at how small cell lung cancer (SCLC) manages to resist treatment with a combination of drugs called olaparib and temozolomide. Researchers found that a process called translesion DNA synthesis (TLS) helped cancer cells repair damage from the treatment, allowing them to survive; specifically, in one model, this was linked to a 25% increase in the cancer cells’ ability to tolerate the drugs. Understanding this resistance mechanism is crucial because targeting TLS could make the existing treatments more effective for patients with SCLC. Who this helps: This helps patients with small cell lung cancer by potentially improving their treatment options.

PubMed

Chromatin-bound RB targets promoters, enhancers, and CTCF-bound loci and is redistributed by cell-cycle progression.

2022

Molecular cell

Sanidas I, Lee H, Rumde PH, Boulay G, Morris R +10 more

Plain English
This study looked at how a protein called RB interacts with different parts of DNA in cells. The researchers discovered that RB binds not just to gene starting points (promoters), but also to other important areas (enhancers and insulators), changing its location as the cell goes through its life cycle. They found that RB is mainly found at promoters in the first phase of the cell cycle (G1) and at other sites when cells are dividing, which is important because it helps control how genes are turned on and off. Who this helps: This helps researchers understand how cancers might develop and could lead to better treatments.

PubMed

Author Correction: Pathway and network analysis of more than 2500 whole cancer genomes.

2022

Nature communications

Reyna MA, Haan D, Paczkowska M, Verbeke LPC, Vazquez M +23 more

PubMed

YAP1 maintains active chromatin state in head and neck squamous cell carcinomas that promotes tumorigenesis through cooperation with BRD4.

2022

Cell reports

Chen N, Golczer G, Ghose S, Lin B, Langenbucher A +12 more

Plain English
This study focused on head and neck squamous cell carcinoma (HNSCC) and found that mutations in a gene called FAT1, which affects the YAP1 pathway, occur in about 29% of these cancers. The researchers discovered that cancers with FAT1 mutations respond better to a drug that inhibits BRD4, which plays a role in keeping cancer cells active and growing. This is important because it highlights a targeted treatment option for patients with this specific type of mutation in their cancer. Who this helps: Patients with FAT1-mutant head and neck cancer.

PubMed

Single-cell transcriptomic profiling for inferring tumor origin and mechanisms of therapeutic resistance.

2022

NPJ precision oncology

Lin M, Sade-Feldman M, Wirth L, Lawrence MS, Faden DL

Plain English
This study looked at a type of throat and neck cancer called Head and Neck Squamous Cell Carcinoma (HNSCC), which doesn't respond well to certain immune therapies. Researchers examined a patient's cancer cells and found that a specific gene change might explain why the treatment failed in one tumor, while the others responded well. Additionally, they discovered that one of the tumors was actually a spread (metastasis) from the original cancer, not a new tumor. Who this helps: This helps patients with HNSCC and their doctors understand treatment responses better.

PubMed

Dissection ofAberration for Cervical Adenocarcinoma Outcomes.

2021

Cancers

Chung TKH, Doran G, Cheung TH, Yim SF, Yu MY +26 more

Plain English
This study examined how certain genetic changes in cervical adenocarcinoma can help predict patient outcomes. Researchers found that mutations E542K, E545K, or H1047R appeared in 41.7% of tumors, and when these mutations were identified in patients' blood samples, they were linked to a shorter time without disease progression (progression-free survival) and overall survival. Additionally, the presence of these mutations in blood samples after treatment accurately indicated recurrence of the cancer with 100% sensitivity, meaning they did not miss any cases, but with less reliability in correctly identifying non-recurrence at 64.29% specificity. These findings are important because they could lead to better monitoring and personalized treatments for cervical adenocarcinoma, improving how doctors manage this type of cancer. Who this helps: This helps patients with cervical adenocarcinoma and their doctors.

PubMed

NR4A1 regulates expression of immediate early genes, suppressing replication stress in cancer.

2021

Molecular cell

Guo H, Golczer G, Wittner BS, Langenbucher A, Zachariah M +23 more

Plain English
This study examined how a protein called NR4A1 affects cancer cells, specifically their ability to handle stress when they are rapidly dividing. Researchers found that when NR4A1 is present, it helps control the activation of certain genes related to stress response, preventing problems that can lead to cell instability. When NR4A1 is removed, cancer cells have significant issues with their chromosomes and can’t grow properly. This is important because about half of breast and other cancers show signs that they rely on NR4A1 for survival and growth. Who this helps: This helps cancer patients and doctors understand a potential target for improving treatments.

PubMed

APOBEC Mutagenesis Is Concordant between Tumor and Viral Genomes in HPV-Positive Head and Neck Squamous Cell Carcinoma.

2021

Viruses

Faden DL, Kuhs KAL, Lin M, Langenbucher A, Pinheiro M +9 more

Plain English
This study looked at how a specific type of mutation, caused by a protein called APOBEC, affects both human tumors and the HPV virus in patients with HPV-positive throat cancer. Researchers found that APOBEC was the main source of mutations in both the tumor cells and the virus, with an average of five mutations in the virus and a strong connection between the mutation patterns in the two. This matters because understanding how these mutations are linked can help develop better treatments for infections and cancers related to HPV. Who this helps: This research helps cancer patients and doctors working with HPV-related cancers.

PubMed

Frequent Co-Authors

Shyamala Maheswaran Daniel A Haber Nicholas J Dyson Matthew S Lawrence Ramin Sakhtemani Adam Langenbucher Lee Zou Maoxuan Lin Mehmet Toner Ben S Wittner

Physician data sourced from the NPPES NPI Registry . Publication data from PubMed . Plain-English summaries generated by AI. Not medical advice.