DR. SAMIM CHALABI, M.D.

TOWANDA, PA

Research Active
Surgery NPI registered 21+ years 15 publications 2002 – 2025 NPI: 1083619530
MicePregnancyGene Expression ProfilingMice, TransgenicGenome, PlantOvaryGlycosylationMolecular Sequence DataPolysaccharidesEvolution, MolecularSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationCarbohydrate SequencePolyploidyMembrane GlycoproteinsEgg Proteins

Practice Location

37 PRATT AVE.
TOWANDA, PA 18848

Phone: (570) 268-2423

What does SAMIM CHALABI research?

Dr. Chalabi investigates how various factors, including maternal diet and genetic variations, influence health outcomes in both humans and animals. He has explored how a mother's high-fiber diet during pregnancy can enhance the growth and immune function of piglets, leading to healthier offspring. Additionally, he studies the genetic interactions that contribute to diseases like rheumatoid arthritis, helping to identify which individuals may be at higher risk. Furthermore, Dr. Chalabi delves into immune system cell development and function, seeking ways to improve treatment outcomes for patients undergoing stem cell transplants.

Key findings

  • Piglets with mothers on a high-fiber diet exhibited better metabolic health and immune function, showing significant changes in gene activity.
  • Identified 9 significant gene interactions associated with rheumatoid arthritis, including a specific interaction that may increase disease risk.
  • Demonstrated that LMPP cells significantly dominate lymphoid cell production compared to CLP cells, enhancing outcomes for stem cell transplant patients.
  • Highlighted a rare case of subglottic mucormycosis in a COVID-19 patient, emphasizing the need for timely awareness and treatment in similar cases.
  • Found that 70% of younger duplicated gene pairs in the brain are co-expressed in the same regions, crucial for understanding brain function.

Frequently asked questions

Does Dr. Chalabi study autoimmune diseases?
Yes, he examines genetic factors related to autoimmune diseases like rheumatoid arthritis.
What are the implications of Dr. Chalabi's work on maternal nutrition?
His research suggests that a high-fiber diet during pregnancy may improve health outcomes for offspring.
Is Dr. Chalabi's research relevant for stem cell transplant patients?
Yes, his work provides insights that could help improve immune function recovery in these patients.
How does Dr. Chalabi's research impact reproductive health?
He explores the role of various proteins and sugars in fertilization, which can inform fertility treatments.
What animal models does Dr. Chalabi use in his research?
Dr. Chalabi frequently utilizes pig models to study the effects of maternal diet on offspring health.

Publications in plain English

Differences in maternal diet fiber content influence patterns of gene expression and chromatin accessibility in fetuses and piglets.

2025

Genomics

Chalabi S, Loonen L, Boekhorst J, Li H, Fang L +8 more

Plain English
This study looked at how the amount of fiber in a mother pig's diet during pregnancy affects the growth and health of her piglets, especially when they ate a low-fiber diet after weaning. Researchers found that piglets whose mothers had a high-fiber diet showed better metabolic health and immune function, with significant changes in gene activity observed in their tissues. These findings highlight that a nutritious, high-fiber diet for pregnant mothers may lead to healthier offspring, which is important for the overall health and productivity of both animals and potentially humans. Who this helps: This benefits farmers, veterinarians, and animal nutritionists looking to improve the health of livestock.

PubMed

*and DOCK1*gene-gene interactions associated with rheumatoid arthritis in the focal adhesion pathway.

2024

Frontiers in genetics

Veyssiere M, Rodriguez Ordonez MDP, Chalabi S, Michou L, Cornelis F +5 more

Plain English
This study looked at how certain genes interact with each other to affect the risk of developing rheumatoid arthritis (RA), a serious autoimmune disease. Researchers found 9 significant gene interactions that relate to RA, including one that increases the risk and one that decreases it. Specifically, in a smaller sample, they confirmed that these interactions can affect whether someone might develop the disease. Who this helps: This research benefits patients at risk for rheumatoid arthritis and their doctors by providing insights into genetic factors that could influence the disease.

PubMed

Co-Transplantation of Barcoded Lymphoid-Primed Multipotent (LMPP) and Common Lymphocyte (CLP) Progenitors Reveals a Major Contribution of LMPP to the Lymphoid Lineage.

2023

International journal of molecular sciences

Michaels V, Chalabi S, Legrand A, Renard J, Tejerina E +9 more

Plain English
Researchers studied two types of cells involved in the immune system, called LMPP and CLP, to see which one is better at helping the body produce immune cells after a transplant. They found that LMPP cells play a much bigger role in generating these immune cells compared to CLP cells. Specifically, when both types were tested together in mice, LMPP was shown to significantly dominate the lymphoid cell production process, providing valuable insights for improving transplant outcomes. Who this helps: This helps patients undergoing stem cell transplants to restore their immune function more effectively.

PubMed

Temporal Gene Expression Profiles Reflect the Dynamics of Lymphoid Differentiation.

2022

International journal of molecular sciences

Chalabi S, Legrand A, Michaels V, Palomares MA, Olaso R +5 more

Plain English
This study looked at how certain blood cells, called lymphoid cells, develop from other types of cells in our body. Researchers examined changes in gene activity in two early cell types and a common precursor cell. They found that while some genes stay active during the early stages, others change as cells differentiate, which can help in identifying and sorting these immune cells more accurately. Who this helps: This benefits doctors and researchers working with blood cell therapies and immune system disorders.

PubMed

Subglottic mucormycosis in a COVID-19 patient: a rare case report.

2022

Oxford medical case reports

Amirzargar B, Jafari M, Ahmadinejad Z, Salehi M, Chalabi S +4 more

Plain English
This study examined a rare case of a 51-year-old woman who developed a serious fungal infection called subglottic mucormycosis while being treated for COVID-19. After she struggled with breathing due to this condition, doctors performed a tracheostomy (an opening in the neck to help her breathe) and removed dead tissue, followed by treatment with antifungal medication. This case highlights the need for doctors to be aware of the risks of mucormycosis in COVID-19 patients, especially since such infections can worsen their condition and require immediate medical attention. Who this helps: Patients recovering from COVID-19, particularly those with weakened immune systems.

PubMed

Region-specific expression of young small-scale duplications in the human central nervous system.

2021

BMC ecology and evolution

Brohard-Julien S, Frouin V, Meyer V, Chalabi S, Deleuze JF +2 more

Plain English
This study looked at how certain duplicated genes in the human brain contribute to the development of different brain regions. Researchers found that younger small-scale duplicated genes, known as ySSDs, are particularly important for region-specific gene expression, meaning they are more likely to be active in the same brain area. About 70% of these younger duplicated gene pairs were co-expressed in the same regions, which highlights their role in shaping how different parts of the brain function. Who this helps: This helps researchers and doctors understand brain development and potential treatments for neurological disorders.

PubMed

Development of mucoadhesive floating hollow beads of acyclovir with gastroretentive properties.

2014

Pharmaceutical development and technology

Svirskis D, Seyfoddin A, Chalabi S, In Kim JH, Langford C +2 more

Plain English
This study focused on creating a new form of acyclovir, a medication used to treat viral infections, that stays in the stomach longer and releases the drug slowly. The researchers made special hollow beads from chitosan, a natural substance, and found that these beads could hold over 70% of the drug and release it more slowly than regular acyclovir tablets. This is important because it could lead to fewer doses needed each day, making it easier for patients to stick to their treatment plan. Who this helps: This benefits patients who need acyclovir, as well as doctors managing their treatment.

PubMed

Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.

2014

Science (New York, N.Y.)

Chalhoub B, Denoeud F, Liu S, Parkin IA, Tang H +77 more

Plain English
This study looked at the genetic history of oilseed rape (Brassica napus), a plant that was created about 7,500 years ago when two different species combined and then evolved further. The researchers found that this plant’s genome has undergone significant changes, including a doubling of chromosomes, leading to a loss of certain genes related to taste while enhancing genes that produce oil. Understanding these genetic changes is important because it helps improve oilseed crops, making them more productive and beneficial for use in food and other industries. Who this helps: This helps farmers and agricultural scientists improve oilseed crops for better yields and quality.

PubMed

Prevalence of gene expression additivity in genetically stable wheat allohexaploids.

2013

The New phytologist

Chelaifa H, Chagué V, Chalabi S, Mestiri I, Arnaud D +9 more

Plain English
This study looked at how genes behave in a type of wheat made by combining different wheat species. Researchers found that in these synthetic wheat plants, 99.3% of the genes acted like a simple average of their parent plants, which is unusual. This finding is important because understanding how these wheat varieties express their genes could lead to better crop yields and more resilient wheat in the future. Who this helps: This helps farmers and agricultural scientists.

PubMed

Glycomics profiling of Chinese hamster ovary cell glycosylation mutants reveals N-glycans of a novel size and complexity.

2010

The Journal of biological chemistry

North SJ, Huang HH, Sundaram S, Jang-Lee J, Etienne AT +5 more

Plain English
This study looked at specific genetic changes in Chinese hamster ovary (CHO) cells to understand how these changes affect the sugars (glycans) attached to proteins. Researchers found that some CHO cell mutants had complex sugar structures, specifically noting one with a sugar mass of about 13,000 that contained 26 sugar units. This finding is important because it opens up new possibilities for creating better biological products, such as medicines made from proteins that require specific sugar structures. Who this helps: This helps researchers and pharmaceutical companies working on drug development.

PubMed

Structural characterisation of neutrophil glycans by ultra sensitive mass spectrometric glycomics methodology.

2009

Glycoconjugate journal

Babu P, North SJ, Jang-Lee J, Chalabi S, Mackerness K +5 more

Plain English
This study examined the sugars attached to proteins in neutrophils, which are key immune cells in the body. Researchers found that neutrophils contain a wide variety of complex sugars, showing a strong similarity between samples from different labs. This understanding is important because it highlights how these sugars could influence immune responses, potentially leading to better treatments for infections or autoimmune diseases. Who this helps: Patients with immune system disorders.

PubMed

Differential O-glycosylation of a conserved domain expressed in murine and human ZP3.

2006

Biochemistry

Chalabi S, Panico M, Sutton-Smith M, Haslam SM, Patankar MS +4 more

Plain English
This study looked at how certain sugars (O-glycans) on a specific protein important for fertilization behave differently in mouse and human versions of that protein. Researchers found two key sugar attachment sites on the mouse protein that are also present in the human version, but the types of sugars attached differ: mouse proteins have more complex sugars at one site, while human proteins have simpler ones. This difference may impact how these proteins interact with sperm, but it doesn't seem to affect fertility in female mice made to produce the human version. Who this helps: Patients undergoing fertility treatments and researchers studying reproductive biology.

PubMed

Differences in glycosylation and sperm-egg binding inhibition of pregnancy-related glycodelin.

2003

Biology of reproduction

Koistinen H, Easton RL, Chiu PC, Chalabi S, Halttunen M +5 more

Plain English
This study looked at a protein called glycodelin, which is involved in reproduction and found in different fluids in the female reproductive system. Researchers discovered that while glycodelins from various sources, like the uterus and amniotic fluid, are similar, there are important differences in how they function and their structure. Specifically, glycodelins from first-trimester pregnancies worked better to prevent sperm from binding to eggs compared to those from women who were not pregnant, which matters because it could help improve our understanding of fertility and early pregnancy. Who this helps: This helps patients trying to conceive and doctors working in reproductive health.

PubMed

Murine and human zona pellucida 3 derived from mouse eggs express identical O-glycans.

2003

Proceedings of the National Academy of Sciences of the United States of America

Dell A, Chalabi S, Easton RL, Haslam SM, Sutton-Smith M +5 more

Plain English
This study looked at how sperm from mice interact with the outer layer of mouse eggs, specifically focusing on a protein called mZP3. Researchers discovered that the sugars (O-glycans) attached to this protein are similar in both mouse and genetically modified human eggs, which helps mouse sperm to bind to them. Understanding this interaction is important because it can lead to better insights into how fertilization works, which could aid in fertility treatments. Who this helps: This helps patients trying to conceive and researchers studying fertility.

PubMed

The expression of free oligosaccharides in human seminal plasma.

2002

The Journal of biological chemistry

Chalabi S, Easton RL, Patankar MS, Lattanzio FA, Morrison JC +4 more

Plain English
This study investigated the types of sugar molecules, known as free oligosaccharides, found in human seminal plasma. Researchers discovered that these sugars are present in concentrations of 0.3-0.4 mg/ml and mainly consist of certain fucosylated forms of lactose, which may play a role in helping sperm successfully reach and fertilize an egg. Understanding these components is important because they could enhance knowledge about fertility and the reproductive process. Who this helps: This helps patients trying to conceive and fertility specialists.

PubMed

Frequent Co-Authors

Anne Dell Jean-François Deleuze Christophe Battail Stuart M Haslam Howard R Morris Anne Boland Robert Olaso Maria Panico Manish S Patankar Gary F Clark

Physician data sourced from the NPPES NPI Registry . Publication data from PubMed . Plain-English summaries generated by AI. Not medical advice.