Dr. Kinney studies how bacterial biofilms, particularly those formed by *Pseudomonas fluorescens*, contribute to persistent infections and antibiotic resistance. He employs advanced techniques like Dynamic Nuclear Polarization-enhanced solid-state nuclear magnetic resonance (NMR) to analyze biofilms' structures, allowing for rapid identification of their components. This research helps develop better treatments for infections caused by these resilient bacterial clusters.
Additionally, he investigates genetic mutations affecting eye development, focusing on how specific protein disruptions lead to structural defects. This line of research aims to inform treatment options for developmental disorders linked to genetic causes.
Key findings
Dr. Kinney's research achieved a 75-fold increase in sensitivity for analyzing bacterial biofilms, enabling quicker and more accurate treatment development.
Identified 80 unique chemical sites in bacterial biofilms, providing insights into their structure and paving the way for improved infection management.
Found that the combination of infliximab with immunomodulators led to an 88% response rate in Crohn's disease patients, compared to 75% without immunomodulators.
Frequently asked questions
Does Dr. Kinney study chronic infections?
Yes, Dr. Kinney focuses on bacterial biofilms that contribute to chronic infections and antibiotic resistance.
What treatments has Dr. Kinney researched?
He has researched treatments involving infliximab for Crohn's disease, as well as methods to manage infections caused by biofilms.
Is Dr. Kinney's work relevant to patients with genetic disorders?
Yes, his research on genetic mutations affecting eye development aims to improve treatments for patients with genetic eye disorders.
What is Dynamic Nuclear Polarization-enhanced NMR?
It's an advanced imaging technique that enhances the sensitivity of nuclear magnetic resonance, allowing researchers to study biological structures in detail.
How can Dr. Kinney's work help patients?
His research aims to develop improved diagnostics and treatments for chronic infections and genetic disorders, leading to better patient outcomes.
Publications in plain English
Ultrasensitive Characterization of Native Bacterial Biofilms via Dynamic Nuclear Polarization-Enhanced Solid-State NMR.
2025
Angewandte Chemie (International ed. in English)
Byeon CH, Kinney T, Saricayir H, Holst Hansen K, Scott FJ +5 more
Plain English This study focused on understanding the structure of bacterial biofilms, specifically those formed by *Pseudomonas fluorescens*, which are known to cause ongoing infections and resist treatment. Researchers used a powerful technique called Dynamic Nuclear Polarization-enhanced solid-state NMR to analyze these biofilms, achieving a 75-fold increase in sensitivity. This breakthrough allows scientists to quickly and accurately identify and measure the components of biofilms, which is crucial for developing better treatments for infections.
Who this helps: This benefits patients and healthcare providers working to treat infections caused by stubborn bacterial biofilms.
Johnson E, Kinney T, Luellen H, Amerud R, Anderson DR +68 more
Plain English Researchers studied a genetic mutation that affects eye development in certain organisms. They found that this mutation leads to defects such as rough patches and irregular surface structures in the eyes. Specifically, they discovered that the mutation disrupts a protein called Prod, which is important for proper cell division during growth, resulting in these eye defects. This discovery matters because understanding these genetic mutations can help in developing treatments for developmental disorders.
Who this helps: This helps patients with genetic eye disorders and researchers looking for solutions to similar developmental issues.
High-Sensitivity Analysis of Native Bacterial Biofilms Using Dynamic Nuclear Polarization-Enhanced Solid-State NMR.
2024
bioRxiv : the preprint server for biology
Byeon CH, Kinney T, Saricayir H, Hansen KH, Scott F +5 more
Plain English This study focused on understanding the structure of bacterial biofilms, which are sticky clusters of bacteria that cause stubborn infections and contribute to antibiotic resistance. Researchers used a powerful technique called Dynamic Nuclear Polarization-enhanced solid-state nuclear magnetic resonance (DNP-ssNMR), allowing them to quickly analyze biofilms without altering their natural state. They identified key components of these biofilms, such as sugars, proteins, and genetic material, in a matter of minutes, which could help develop better treatments to fight infections.
Who this helps: This helps patients with chronic infections caused by biofilms, as well as doctors looking for effective treatment methods.
Plain English This research focused on studying bacterial biofilms using advanced imaging techniques that do not require special labeling. The scientists identified 80 unique chemical sites in the biofilms, revealing important differences in their structure, which could lead to new ways to fight infections caused by these bacteria. Understanding biofilms better can lead to improved treatments for persistent bacterial infections.
Who this helps: Patients with chronic infections.
Plain English This study examined the structure of a specific type of bacteria, Pseudomonas fluorescens, which forms biofilms. Researchers identified around 80 unique chemical sites in the biofilm and were able to differentiate between mobile and rigid parts of the structure. This work is significant because it lays the groundwork for new strategies to tackle infections caused by these bacteria, which can be difficult to treat.
Who this helps: Patients with infections caused by biofilm-forming bacteria.
Transjugular liver biopsy after transjugular intrahepatic portosystemic shunt (TIPS) or direct intrahepatic portocaval shunt (DIPS): Is it feasible, effective, and safe?
2018
Diagnostic and interventional imaging
Kaufman C, Aryafar H, Minocha J, Kinney T
Plain English The study looked at the safety and effectiveness of a specific type of liver biopsy called transjugular liver biopsy (TJLB) in patients who had previously undergone procedures to manage liver blood flow, known as TIPS or DIPS. Over seven years, seven successful biopsies were done without any complications. This research matters because it shows that these biopsies can be done safely in patients who have had these complex procedures, helping doctors gather important information about liver health.
Who this helps: This helps patients with liver conditions and their doctors.
Practice Trends of Fibrinogen Monitoring in Thrombolysis.
2018
Journal of clinical medicine
Kaufman C, Kinney T, Quencer K
Plain English This study looked at how doctors monitor fibrinogen levels, a protein in the blood, during a treatment called thrombolysis, which helps break up blood clots. Out of 455 doctors surveyed, 82% said they track fibrinogen levels, and nearly all of them adjusted treatment based on those levels. Although tracking fibrinogen levels didn't significantly reduce major bleeding incidents—1.86% for those who monitored it versus 1.93% for those who didn't—only 34% believed low levels were linked to bleeding problems, highlighting a need for more research to understand its importance.
Who this helps: This information benefits doctors and their patients who undergo thrombolysis treatment.
Preprocedure Evaluation of a Dysfunctional Dialysis Access.
2017
Techniques in vascular and interventional radiology
Quencer KB, Kidd J, Kinney T
Plain English This study focused on how to evaluate patients who need help with their hemodialysis access, particularly when issues arise. The researchers emphasized using a structured approach to spot problems early, aiming to prevent serious complications like blood clots. They discussed specific areas, such as the cephalic arch in certain fistulas, where these issues often occur.
Who this helps: This benefits patients undergoing hemodialysis and the doctors responsible for their care.
Psychometric Properties and Construct Validity of the Knowledge Information Profile-Coumadin.
2015
The Journal of pharmacy technology : jPT : official publication of the Association of Pharmacy Technicians
Wilson FL, Templin TN, Nordstrom CK, Carter JM, Baker L +3 more
Plain English This study focused on improving how we assess patients' knowledge about Coumadin (or warfarin), a medication that requires careful management. Researchers tested a tool called the Knowledge Information Profile-Coumadin (KIP-C20) and found that a shorter version, KIP-C14, is effective with 14 questions across three key areas of knowledge. While KIP-C14 showed some reliability with a score of 0.67, it still needs more improvement to be a fully dependable assessment tool.
Who this helps: This helps patients who take Coumadin by ensuring they understand their treatment better.
A multicenter, prospective study of a new fully covered expandable metal biliary stent for the palliative treatment of malignant bile duct obstruction.
2013
Gastroenterology research and practice
Petersen BT, Kahaleh M, Kozarek RA, Loren D, Gupta K +13 more
Plain English This study looked at a new type of fully covered metal stent designed to help patients with blocked bile ducts due to cancer. Researchers found that the stent worked well, with a 98% success rate in placing it and lowering a harmful substance in the blood, bilirubin, from an average of 8.9 mg/dL to 1.2 mg/dL in just one month. This is important because it shows a reliable way to relieve symptoms for patients with inoperable bile duct obstructions, improving their quality of life.
Who this helps: This benefits patients suffering from malignant bile duct obstruction.
Impact of experience with a retrograde-viewing device on adenoma detection rates and withdrawal times during colonoscopy: the Third Eye Retroscope study group.
2010
Gastrointestinal endoscopy
DeMarco DC, Odstrcil E, Lara LF, Bass D, Herdman C +12 more
Plain English This study looked at how a special device called the Third Eye Retroscope (TER) can help doctors find more polyps during colonoscopy, which is important for screening for colon cancer. They found that using the TER led to a 14.8% increase in the number of polyps detected and a 16.0% increase for adenomas, with the biggest benefits seen after doctors had used it for 15 procedures. These improvements occurred without adding extra time to the process, which is crucial for patient care.
Who this helps: This benefits patients undergoing colon cancer screening by increasing the likelihood of finding potentially harmful growths early.
Evidence-based imaging of pancreatic malignancies.
2010
The Surgical clinics of North America
Kinney T
Plain English This study looked at the best ways to use different imaging techniques, like CT scans and endoscopic ultrasounds (EUS), for diagnosing pancreatic cancer. Researchers found that while CT scans are helpful, they often miss early-stage pancreatic lesions, making EUS a valuable tool for more accurate diagnosis and staging. This is important because catching pancreatic cancer early can significantly improve treatment outcomes.
Who this helps: Patients with suspected pancreatic cancer benefit from more accurate and timely diagnoses.
Endoscopic ultrasound rendezvous for bile duct access using a transduodenal approach: cumulative experience at a single center. A case series.
2010
Endoscopy
Kim YS, Gupta K, Mallery S, Li R, Kinney T +1 more
Plain English This research focused on a method of accessing the bile duct when a standard procedure fails. Over 10 years, 15 patients (average age 66) were treated using a specific technique that successfully allowed for bile duct access in all cases, achieving a drainage success rate of 80%. This is significant because it offers an effective alternative for patients who cannot be treated using traditional methods, minimizing complications and allowing for quicker intervention.
Who this helps: This benefits patients with challenging bile duct issues who need alternative treatment options.
Immunomodulators and "on demand" therapy with infliximab in Crohn's disease: clinical experience with 400 infusions.
2003
The American journal of gastroenterology
Kinney T, Rawlins M, Kozarek R, France R, Patterson D
Plain English This study looked at the use of infliximab, a medication for Crohn's disease, and whether combining it with other immunosuppressive drugs improved patient outcomes. Researchers reviewed the records of 122 patients who received 400 infusions of infliximab and found that the overall response rate was about 88% for those using certain immunomodulators compared to 75% for those who did not use them. While patients receiving immunomodulators had fewer side effects from infliximab, the combination did not significantly improve other outcomes like the need for prednisone, fistula improvement, or the timing of infliximab infusions.
Who this helps: This information benefits doctors and patients managing Crohn's disease.
Treatment of benign esophageal tumors by endoscopic techniques.
2003
Seminars in thoracic and cardiovascular surgery
Kinney T, Waxman I
Plain English This study looks at the use of endoscopic techniques to treat non-cancerous tumors in the esophagus. Researchers found that while these methods are safe and less invasive, they are mainly suitable for smaller tumors and are not yet widely used in Western countries. This matters because improving access to these procedures could lead to better management of esophageal tumors without the need for more invasive surgery.
Who this helps: Patients with benign esophageal tumors.
Cleft cluster: a strategy for concurrent correction of multiple secondary clefting deformities.
1995
The Journal of craniofacial surgery
Denny AD, Kinney T
Plain English Researchers studied a new method called "cleft cluster" to correct multiple deformities related to cleft lip and palate surgery in a single treatment session. They worked with 85 patients, performing an average of 7.2 procedures each and keeping hospitalization to an average of about 4 days. The results were promising, with an 8% recurrence of complications and improvements in patient care that reduce the need for multiple surgeries and hospital visits, making the approach more efficient and cost-effective.
Who this helps: This benefits patients with cleft-related conditions who need multiple surgeries, as well as their families and healthcare providers.
Measurement of tissue carcinoembryonic antigen levels from fine-needle biopsy specimens: technique and clinical usefulness.
1992
Radiology
Lee MJ, Mueller PR, Dawson SL, McLaughlin DT, Kinney T +3 more
Plain English This study looked at the levels of a substance called carcinoembryonic antigen (CEA) in tissue samples taken from 54 biopsies of patients with abdominal issues to see if it can help diagnose cancer. Out of the 50 patients, 39 had cancer, and researchers found that the CEA levels were generally higher in cancer cases compared to benign conditions, especially in patients with colon cancer (9 out of 12 showed higher tissue CEA levels). This finding is important because it suggests that measuring tissue CEA can help doctors better identify and monitor certain types of cancers, particularly those in the abdomen.
Who this helps: This helps doctors and patients with suspected abdominal cancers.
Reversibility of cardiac xenograft rejection in primates.
1991
The Journal of heart and lung transplantation : the official publication of the International Society for Heart Transplantation
McManus RP, Kinney T, Komorowski R, Hunter J
Plain English This study explored the possibility of using hearts from primates as an alternative to human donors and how well these hearts could be accepted by baboons without facing rejection. Researchers found that baboons receiving immunosuppressive drugs had significantly longer heart survival times (average of 94 days) compared to the control group with no medication (average of just 9 days). However, most transplant rejections were difficult to manage, showing that even with medication, the immune system often attacks the transplanted organ.
Who this helps: This research benefits patients in need of heart transplants by exploring new options for organ donors.
Pulmonary vein clamping during cardiopulmonary bypass: enhancement of operative field visualization and myocardial hypothermia.
1987
The Annals of thoracic surgery
Daily PO, Kinney T, Steinke TA
Plain English This study explored how temporarily blocking blood flow in the pulmonary veins during heart surgery makes it easier for doctors to see what they are doing and helps keep the heart cool. The researchers outlined two simple methods to achieve this blockage. These findings are important because better visibility and controlled cooling can lead to safer surgeries and better recovery for patients.
Who this helps: Patients undergoing heart surgery.
The maintenance of Plasmid-containing organisms in populations of Escherichia coli.
1981
Journal of general microbiology
Helling RB, Kinney T, Adams J
Plain English This study looked at how certain strains of E. coli that carry small genetic materials called plasmids behave in a limited food environment. It found that initially, these plasmid-carrying bacteria grew slower than those without plasmids, causing their numbers to drop. However, over time, some plasmid-carrying bacteria adapted and grew faster, leading to fluctuations in their population and preventing the complete loss of the plasmid.
Who this helps: This research benefits scientists studying bacterial genetics and adaptations.
Plain English This study investigated how certain E. coli bacteria that have extra genetic material (plasmids) interact with their plasmid-free counterparts in a limited food environment. Researchers found that the plasmid-containing E. coli grew slower than those without plasmids, but they produced a substance (colicin) that harmed the growth of the plasmid-free E. coli. Understanding this interaction is important because it helps explain how genetic diversity is maintained in bacteria, which can influence their evolution and survival.
Who this helps: This helps scientists studying bacterial evolution and antibiotic resistance.