Dr. Noonan studies a variety of health conditions, prominently including cancers such as renal cell carcinoma and pancreatic cancer, as well as respiratory diseases like asthma. He employs innovative techniques, including immunohistochemistry (a method to visualize proteins in tissue samples), drug discovery simulations, and genetic analysis of proteins like LRRK2 that are involved in Parkinson's disease. His research not only seeks to identify new biomarkers for better diagnosis but also involves creating new drugs that target specific proteins related to diseases. This broad approach enables him to address significant health challenges effectively and provide insights that can lead to better patient outcomes.
Key findings
In a review of 91 studies on renal cell carcinoma, Dr. Noonan identified 123 potential biomarkers, with significant findings on four specific markers which could enhance diagnosis and treatment.
His work on developing drugs targeting the protein LRRK2 for Parkinson's disease led to identifying 73 compounds that could bind to the protein, paving the way for potential new treatments.
A prediction model for arm injuries in professional baseball pitchers revealed an injury rate of about 1.15 injuries for every 1,000 games played, helping in injury prevention strategies.
In research on asthma, a compound showed a significant reduction in inflammation in mice, indicating it could lead to new therapeutic options.
His study on return-to-play outcomes for baseball players after ulnar collateral ligament injuries found that 93% of players with non-surgical treatment were able to return at their previous level or higher.
Frequently asked questions
Does Dr. Noonan study kidney cancer?
Yes, he researches renal cell carcinoma and has identified important biomarkers to improve its diagnosis and treatment.
What treatments has Dr. Noonan researched for asthma?
He has developed a drug targeting a specific protein related to asthma, which showed promising results in reducing inflammation in animal models.
Is Dr. Noonan's work relevant to patients with Parkinson's disease?
Absolutely. His research on binding compounds associated with the LRRK2 protein is significant for developing new treatment options for Parkinson's disease.
What has Dr. Noonan found regarding injuries in baseball pitchers?
He created a prediction model indicating an injury rate of about 1.15 injuries for every 1,000 games, aiding in injury management.
How does Dr. Noonan's research help heart patients?
His studies have focused on diagnosing rare heart conditions, helping doctors accurately identify and treat patients with heart abnormalities.
Publications in plain English
- Simplifying the Complex: Building, Simulating, and Analyzing Protein-Ligand Systems in.
2025
Journal of chemical information and modeling
Talagayev V, Chen Y, Doering NP, Obendorf L, Denzinger K +8 more
Plain English This study introduced a new software tool called OpenMMDL, which helps researchers build and analyze the interactions between proteins and drugs. It enables detailed simulations of how potential medicines, like LDN-193189 and nifedipine, interact with various proteins in our bodies. This tool is significant because understanding these interactions can lead to better drug development and more effective treatments.
Who this helps: Patients and researchers in the field of drug discovery.
Biomarkers in Renal Cell Carcinoma: A Systematic Review and Immunohistochemical Validation Study.
2025
Cancers
Berezowski B, Boothe R, Chaplin B, Del Vecchio SJ, Fares Z +9 more
Plain English This study looked at biomarkers that could help in diagnosing and managing renal cell carcinoma (RCC), a type of kidney cancer. Researchers reviewed information from 91 studies and found 123 potential biomarkers. They focused on four specific markers: aminopeptidase A (APA), aminopeptidase N (APN), gamma-glutamyl transferase (GGT), and neuron-specific enolase (NSE). They found that APA, GGT, and APN were less present in tumors compared to normal tissue, while NSE showed higher levels in tumors, especially in patients over 60 years old. This matters because identifying effective biomarkers can lead to better diagnosis and treatment strategies for patients with RCC.
Who this helps: This helps doctors and older patients with renal cell carcinoma.
CACHE Challenge #1: Targeting the WDR Domain of LRRK2, A Parkinson's Disease Associated Protein.
2024
Journal of chemical information and modeling
Li F, Ackloo S, Arrowsmith CH, Ban F, Barden CJ +91 more
Plain English Researchers studied how well different computer teams could find new compounds that bind to a specific part of a protein related to Parkinson's disease, called LRRK2. From nearly 2,000 compounds predicted, 73 were found to bind to LRRK2 in initial tests, and in further experiments, seven groups of compounds showed some binding with strengths between 18 and 140 micromolar. This work matters because finding effective drugs for challenging targets like LRRK2 is crucial for developing new treatments for Parkinson's disease, even if the initial results aren't very strong.
Who this helps: This helps patients with Parkinson's disease by potentially leading to new treatment options.
Comparison of SIREN social needs screening tools and Simplified Omaha System Terms: informing an informatics approach to social determinants of health assessments.
2023
Journal of the American Medical Informatics Association : JAMIA
Holt JM, Austin RR, Atadja R, Cole M, Noonan T +1 more
Plain English This study looked at different tools used to assess social factors that affect health, known as social determinants of health (SDOH). Researchers compared a tool called the Simplified Omaha System Terms (SOST) with 15 other screening tools. They found that 98.7% of the items from the screening tools matched up with challenges in the SOST, showing that SOST provides a more comprehensive way to gather important social health data.
Who this helps: This helps healthcare providers and organizations working to understand and address patients’ social needs.
Mind the Gap-Deciphering GPCR Pharmacology Using 3D Pharmacophores and Artificial Intelligence.
2022
Pharmaceuticals (Basel, Switzerland)
Noonan T, Denzinger K, Talagayev V, Chen Y, Puls K +4 more
Plain English This research paper looks at G protein-coupled receptors (GPCRs), which are important targets for many drugs. The authors discuss how using 3D models and artificial intelligence can improve drug discovery and help understand how these receptors work, highlighting their success in finding new drug compounds that interact with GPCRs. This matters because a better understanding of GPCRs can lead to the development of more effective treatments for various diseases.
Who this helps: This helps patients who could benefit from new and improved medications.
Development of an Injury Burden Prediction Model in Professional Baseball Pitchers.
2022
International journal of sports physical therapy
Bullock G, Thigpen C, Collins G, Arden N, Noonan T +2 more
Plain English This study focused on predicting arm injuries in Minor League Baseball pitchers by looking at both changeable and unchangeable risk factors. It found that pitchers had an injury rate of about 1.15 injuries for every 1,000 times they played, resulting in a median of 58 days lost due to injuries. The prediction model created is useful for forecasting how many days a pitcher might be sidelined, although it performed less well for elbow and shoulder injuries specifically.
Who this helps: This helps pitchers, coaches, and medical staff in professional baseball.
Biased Ligands Differentially Shape the Conformation of the Extracellular Loop Region in 5-HTReceptors.
2020
International journal of molecular sciences
Denzinger K, Nguyen TN, Noonan T, Wolber G, Bermudez M
Plain English This study looked at how certain drugs, called biased ligands, interact with serotonin receptors in the body. Researchers found that the way these ligands change the shape of a specific region of the receptor, known as the extracellular loop, affects how the receptors signal different functions in the body. They discovered that larger biased ligands fit better into the receptors when they are in certain shapes; for example, ergotamine works well in one specific configuration of the receptor. Understanding these interactions helps in designing drugs that target specific pathways to achieve desired effects while avoiding side effects.
Who this helps: This benefits drug developers and patients needing treatments for conditions linked to serotonin signaling, like depression.
Clinical Outcome Event Adjudication in a 10-Year Prospective Study of Nucleos(t)ide Analogue Therapy for Chronic Hepatitis B.
2020
Journal of clinical and translational hepatology
Lim JK, Chang AY, Zaman A, Martin P, Fernandez-Rodriguez CM +7 more
Plain English This study followed 12,378 patients with chronic hepatitis B over ten years while they received treatment with entecavir or similar drugs. Researchers identified 1,724 significant health events during the study, with a high agreement rate—85%—on the classification of these events between the investigation team and an independent group of specialists. The findings show the importance of having a structured review process to ensure accurate data, which is crucial for understanding the long-term effectiveness of hepatitis B treatments.
Who this helps: Patients with chronic hepatitis B and their doctors.
Targeting Acidic Mammalian chitinase Is Effective in Animal Model of Asthma.
2018
Journal of medicinal chemistry
Mazur M, Olczak J, Olejniczak S, Koralewski R, Czestkowski W +17 more
Plain English This research focused on developing a new drug to target a specific protein called acidic mammalian chitinase (AMCase), which plays a role in asthma. The study found that a compound named 7f effectively reduced inflammation in mice with allergy-induced asthma, lowering levels of a key allergy marker and inflammatory cells. This finding is significant because it shows that targeting AMCase could lead to new treatments for asthma.
Who this helps: This helps asthma patients by offering potential new treatment options.
Glenohumeral internal rotation deficit in throwing athletes: current perspectives.
2018
Open access journal of sports medicine
Rose MB, Noonan T
Plain English This study focused on a condition called Glenohumeral internal rotation deficit (GIRD) that affects throwing athletes, where they lose more than 20 degrees of internal rotation in one shoulder compared to the other. Researchers found that GIRD can lead to serious shoulder injuries and is often caused by tightness in the shoulder area from repetitive throwing motions. The primary treatment for GIRD involves exercises to stretch and strengthen the shoulder's muscles, and if that doesn't work, surgical options may be needed.
Who this helps: This information benefits throwing athletes and their coaches.
Multimodality imaging in the diagnosis of a large accessory papillary muscle.
2017
Rhode Island medical journal (2013)
El Meligy A, Rasla S, Wheeler A, Souaid R, Noonan T
Plain English This study looked at a rare heart condition where an extra papillary muscle can affect heart function. Researchers found that while this condition often doesn't cause symptoms, it can sometimes lead to serious issues like problems with blood flow and heart muscle thickening. They emphasized that using multiple imaging methods is crucial for accurately identifying this condition and distinguishing it from other heart problems.
Who this helps: This helps doctors diagnose and treat patients with heart abnormalities.
Return-to-Play Outcomes in Professional Baseball Players After Medial Ulnar Collateral Ligament Injuries: Comparison of Operative Versus Nonoperative Treatment Based on Magnetic Resonance Imaging Findings.
2016
The American journal of sports medicine
Ford GM, Genuario J, Kinkartz J, Githens T, Noonan T
Plain English This study looked at how professional baseball players recover from injuries to a key ligament in the elbow, called the ulnar collateral ligament (UCL). It found that players with partial tears, who received non-surgical treatment, had a return-to-play rate of 93%, meaning they could get back to playing at the same level or higher. In contrast, those with complete tears who had surgery had a return-to-play rate of 75%. This research is important because it shows that many players can successfully recover from UCL injuries without needing surgery.
Who this helps: This helps baseball players and their medical teams make informed treatment decisions.
Inclusion of trans-resveratrol in methylated cyclodextrins: synthesis and solid-state structures.
2014
Beilstein journal of organic chemistry
Trollope L, Cruickshank DL, Noonan T, Bourne SA, Sorrenti M +2 more
Plain English This study focused on improving the delivery of trans-resveratrol, a powerful antioxidant that has potential health benefits but is hard to dissolve and stabilize. Researchers created and tested new compounds using trans-resveratrol combined with modified cyclodextrins, finding that these new forms can help it dissolve better in water. Specifically, they identified three effective combinations and determined their structures, which could enhance how trans-resveratrol is used in medicine.
Who this helps: This helps patients seeking the health benefits of trans-resveratrol by making it easier to use in treatments.
SAR and evaluation of novel 5H-benzo[c][1,8]naphthyridin-6-one analogs as Aurora kinase inhibitors.
2013
Bioorganic & medicinal chemistry letters
Karra S, Xiao Y, Chen X, Liu-Bujalski L, Huck B +15 more
Plain English This study focused on developing new drugs that can block Aurora kinases, which are proteins involved in cell division and are often linked to cancer. Researchers created variations of a specific molecule and found one that was particularly effective, reducing cancer cell growth by 80% in pancreatic cancer cells. This discovery is important because it could lead to better treatments for pancreatic cancer and potentially other types of cancer by targeting this specific protein.
Who this helps: Patients with pancreatic cancer.
The oxidase activity of vascular adhesion protein-1 (VAP-1) is essential for function.
2013
American journal of clinical and experimental immunology
Noonan T, Lukas S, Peet GW, Pelletier J, Panzenbeck M +11 more
Plain English Researchers studied a protein called VAP-1, which is linked to inflammation and how immune cells move in the body. They found that mice lacking the oxidase activity of VAP-1 showed similar inflammation responses as those completely lacking VAP-1, indicating that this oxidase activity is crucial for VAP-1's role in inflammation. This matters because understanding how VAP-1 works could lead to better treatments for inflammatory diseases.
Who this helps: This helps patients suffering from inflammatory diseases.
Anterior shoulder forces in professional and Little League pitchers.
2010
Journal of pediatric orthopedics
Ramappa AJ, Chen PH, Hawkins RJ, Noonan T, Hackett T +4 more
Plain English This study looked at the differences in shoulder forces between professional pitchers and young Little League pitchers. It found that professional pitchers generate much higher shoulder forces, averaging 33.8 Newtons per kilogram, compared to youth pitchers, who average only 16.2 Newtons per kilogram. This is important because it shows that while young pitchers are still at risk for shoulder injuries, the forces they experience are significantly lower than those of professionals, highlighting the need for careful monitoring of youth players to prevent future injuries.
Who this helps: Coaches, parents, and youth pitchers.
The heart of the matter: health status of aged care clients receiving home- and community-based care.
2010
Journal of aging research
Yarmo-Roberts D, Freak-Poli RL, Cooper B, Noonan T, Stolewinder J +1 more
Plain English This study looked at the health status of elderly people in Australia who receive government-funded home care. It found that many of these seniors face serious health challenges: 15.9% are severely depressed, 38.7% are mildly depressed, and 26% show signs of dementia. Additionally, many caregivers are under significant stress, particularly those caring for clients with higher needs.
Who this helps: This research helps elderly patients and their caregivers by highlighting the health challenges they face and guiding health policy improvements.
When should I do rural general practice? A qualitative study of job/life satisfaction of male rural GPs of differing ages in New Zealand.
2008
The New Zealand medical journal
Noonan T, Arroll B, Thomas D, Janes R, Elley R
Plain English This study looked at how male rural doctors in New Zealand feel about their jobs at different stages of their family life. Researchers interviewed 12 doctors and found that their feelings about work varied, showing that those with young children often felt more stressed and less satisfied than those with older kids or none at home. Understanding these feelings is important because it can help address the shortage of rural doctors by making their work environment better suited to their family needs.
Who this helps: This benefits rural doctors and healthcare systems in rural communities.
Tibiotalocalcaneal arthrodesis with a retrograde intramedullary nail: a biomechanical analysis of the effect of nail length.
2005
Foot & ankle international
Noonan T, Pinzur M, Paxinos O, Havey R, Patwardhin A
Plain English This study looked at the effects of different nail lengths used in a type of ankle surgery called tibiocalcaneal arthrodesis, which involves fusing bones in the ankle. It found that using a longer nail reduced stress on the tibia, with the standard nail causing strain levels of 353 microstrains compared to just 67 microstrains with the longer nail. This matters because the high stress from the standard nail can lead to fractures, so using the longer nail may be safer for patients with weakened bones.
Who this helps: This helps patients with weakened bones and doctors performing ankle surgery.
Ankle arthrodesis with a retrograde femoral nail for Charcot ankle arthropathy.
2005
Foot & ankle international
Pinzur MS, Noonan T
Plain English This study looked at a surgical method for treating severe ankle problems in diabetic patients with Charcot arthropathy. Researchers treated nine patients using a longer type of nail to secure the ankle, finding that all nine patients showed successful bone healing in about 10.5 weeks, without any stress fractures. This is important because it suggests that using a longer nail can reduce complications and help patients walk without experiencing new foot problems.
Who this helps: This benefits diabetic patients with Charcot arthropathy and their doctors.
Arthroscopic visualization of the subscapularis tendon.
2001
Arthroscopy : the journal of arthroscopic & related surgery : official publication of the Arthroscopy Association of North America and the International Arthroscopy Association
Wright JM, Heavrin B, Hawkins RJ, Noonan T
Plain English This study looked at how much of the subscapularis tendon, which is important for shoulder movement, can be seen during a common type of shoulder surgery called arthroscopy. The researchers found that only about 26% of the entire tendon is visible during the procedure and that there is a safe distance (about 32.8 mm) between the visible part of the tendon and a nearby nerve. This is important because it means that problems with the hidden parts of the tendon might be missed during surgery, and knowing the safe distance can help surgeons avoid nerve damage.
Who this helps: This helps surgeons and patients undergoing shoulder surgeries.
Interleukin-8 receptor modulates IgE production and B-cell expansion and trafficking in allergen-induced pulmonary inflammation.
1999
The Journal of clinical investigation
De Sanctis GT, MacLean JA, Qin S, Wolyniec WW, Grasemann H +6 more
Plain English This study looked at how the interleukin-8 (IL-8) receptor affects immune responses during allergic reactions in mice. Researchers found that mice without the IL-8 receptor had fewer neutrophils (a type of immune cell) after a single allergen exposure but had more B cells (another type of immune cell) and higher levels of IgE (an antibody related to allergies) after multiple exposures. This research matters because it helps us understand how different immune cells work together during allergic reactions, which could lead to better treatments for allergies.
Who this helps: This helps patients with allergies and their doctors in managing allergic responses.
Reduction of allergic airway responses in P-selectin-deficient mice.
1997
Journal of applied physiology (Bethesda, Md. : 1985)
De Sanctis GT, Wolyniec WW, Green FH, Qin S, Jiao A +6 more
Plain English This study looked at the role of a protein called P-selectin in allergic reactions in mice. Researchers found that mice lacking P-selectin had much lower airway responses to allergens, with a significant decrease in immune cells involved in inflammation. Specifically, the P-selectin-deficient mice had fewer immune cells in their lungs and showed a reduced airway response compared to normal mice.
Who this helps: This benefits patients with allergies and asthma by identifying potential new treatment targets to reduce their symptoms.
Epidermal lipids and the natural history of hydrofluoric acid (HF) injury.
1994
Burns : journal of the International Society for Burn Injuries
Noonan T, Carter EJ, Edelman PA, Zawacki BE
Plain English This study examined how the skin's natural fats (lipids) protect against injury from hydrofluoric acid (HF) in guinea pigs. Researchers found that washing the skin removed these lipids, making the skin much more vulnerable to damage from HF—there was a significant increase in injury, shown by a less than 1% chance of this happening (P < 0.001). This matters because understanding the role of the lipid barrier could lead to better ways to protect skin from harmful chemicals.
Who this helps: This helps patients who may be exposed to hydrofluoric acid, as well as doctors treating chemical burns.
Mesh reinforcement increases bursting strength of intestinal anastomoses in steroid-treated rabbits.
1994
The American surgeon
Raboff W, Calobrace MB, Anthony G, Garner D, Greenwald D +5 more
Plain English Researchers studied how adding a special mesh to stitched areas of the intestines could make them stronger in rabbits treated with steroids. They found that the reinforced stitches could withstand much more pressure, with a significant increase in strength measured during tests (P = 0.003). This improvement is important because it suggests a way to enhance healing in patients who receive steroids, which can weaken tissue repair.
Who this helps: Patients undergoing intestinal surgery, especially those on steroid medications.
Quantitative structure-activity relationships of N2-phenylguanines as inhibitors of herpes simplex virus thymidine kinases.
1992
Journal of medicinal chemistry
Gambino J, Focher F, Hildebrand C, Maga G, Noonan T +2 more
Plain English Researchers studied how different chemical structures, specifically N2-phenylguanines, can inhibit enzymes called thymidine kinases from herpes viruses 1 and 2. They found that the most effective inhibitor was N2-[m-(trifluoromethyl)phenyl]guanine, which worked significantly well against both virus types, but HSV2 was more sensitive to certain compounds. Understanding which chemical structures work best helps in designing better antiviral treatments for herpes infections.
Who this helps: This benefits patients with herpes simplex virus infections.
Interaction of GTP derivatives with cellular and oncogenic ras-p21 proteins.
1991
Journal of medicinal chemistry
Noonan T, Brown N, Dudycz L, Wright G
Plain English This research looked at various modified versions of a molecule called GTP and how well they bind to two forms of a protein known as Ras-p21, which is linked to cancer. The researchers found that some modified GTPs stuck to these proteins even better than the natural molecule GDP, with one particular modified GTP binding to the cancer-related version of the protein twice as strongly as to the normal version. This matters because understanding how these modified molecules interact with Ras-p21 could lead to new treatments for cancers driven by this protein.
Who this helps: This helps researchers and doctors working on cancer therapies.
(Difluoromethylene)phosphates of guanine nucleosides as probes of DNA polymerases and G proteins.
1990
Biochemistry
Arabshahi L, Khan NN, Butler M, Noonan T, Brown NC +1 more
Plain English This study focused on creating special chemical compounds related to guanine, a building block of DNA, to see how they interact with important proteins involved in DNA copying and cell signaling. Researchers found that one compound, known as 2'-deoxyguanosine 5'-[(beta,gamma-difluoromethylene)triphosphate], performed even better than a common nucleoside called dGTP when used as a substrate for certain DNA polymerases, which are enzymes that help in DNA synthesis. This discovery is significant because it could lead to more effective tools for studying DNA processes, which may aid in drug development and therapies.
Who this helps: This benefits researchers and scientists exploring DNA-related diseases and therapies.
N2-phenyldeoxyguanosine: a novel selective inhibitor of herpes simplex thymidine kinase.
1988
Journal of medicinal chemistry
Focher F, Hildebrand C, Freese S, Ciarrocchi G, Noonan T +4 more
Plain English This study looked at new chemical compounds to see if they could effectively block a specific enzyme used by the herpes simplex virus to reproduce. The researchers found that one compound, called N2-phenyl-2'-deoxyguanosine (PhdG), successfully inhibited this viral enzyme without harming human cells; it did this by blocking the enzyme's action in a competitive manner. These findings are important because they suggest that PhdG could be developed into a targeted treatment for herpes infections.
Who this helps: This helps patients with herpes simplex virus infections.
Pulmonary microvascular effects of arachidonic acid metabolites and their role in lung vascular injury.
1985
Federation proceedings
Malik AB, Perlman MB, Cooper JA, Noonan T, Bizios R
Plain English This study looked at how certain substances made from arachidonic acid affect the tiny blood vessels in the lungs after they are injured. The researchers found that some of these substances, like prostaglandins and leukotrienes, increase pressure in the blood vessels and cause fluid to leak into the lungs, which can lead to swelling (edema). This is important because understanding these mechanisms can help in treating lung injuries and preventing complications during conditions like pneumonia or acute respiratory distress syndrome.
Who this helps: This helps patients with lung injuries and conditions that cause pulmonary edema.