J S Conery

University of Oregon, Institute of Ecology and Evolution, Eugene, OR, 97402, USA.

11 publications 2000 – 2025

What does J S Conery research?

J S Conery studies the diversity and ecological role of macrofungi, including mushrooms, in subtropical forests. His work primarily involves cataloging various fungal species at the Ordway-Swisher Biological Station in Florida. By using DNA testing and sampling techniques, he has identified over 546 different species of fungi at this site alone, with estimates suggesting there could be up to 1,200 species. This research is crucial because fungi play a vital role in forest ecosystems, helping trees absorb nutrients and decompose organic matter, yet they remain less studied compared to plants and animals. Understanding fungal diversity contributes to better conservation strategies for these environments.

Key findings

  • Identified over 546 species of macrofungi at the Ordway-Swisher Biological Station, with estimates indicating a likely total of 900 to 1,200 species.
  • Showed that this single site has more fungal species than the total number of vertebrate animals or plants, underscoring the ecological significance of fungi.
  • Created a reference collection that will aid future research and conservation efforts regarding fungal biodiversity.

Frequently asked questions

Does Dr. Conery study mushrooms?
Yes, Dr. Conery focuses on the diversity of mushrooms and other macrofungi in Florida.
What is the importance of Dr. Conery's research?
His research is essential for understanding the role of fungi in ecosystems, which helps in the conservation of natural habitats.
How many species of fungi did Dr. Conery identify?
He identified over 546 species and estimates there could be between 900 and 1,200 species at his research site.
What techniques does Dr. Conery use in his research?
He uses DNA testing and sampling to accurately identify and catalog various fungal species.
Why are fungi important in forest ecosystems?
Fungi help trees absorb nutrients and decompose dead material, which is crucial for forest health and biodiversity.

Publications in plain English

Think globally, barcode locally: nine years of macrofungi sampling reveals extensive biodiversity at the ordway-swisher biological station, a subtropical site in Florida.

2025

Fungal biology

Caiafa MV, Kaminsky L, Healy R, Sheffer LP, Willis CB +26 more

Plain English
Researchers spent nine years cataloging mushrooms and other large fungi at a Florida nature preserve, identifying over 546 species and estimating the actual total is probably between 900 and 1,200 species—meaning there are more fungal species at this one site than there are vertebrate animals or plants. They used DNA testing to precisely identify each specimen and created a reference collection for future research. This matters because fungi are essential to forest ecosystems (they help trees absorb nutrients and break down dead material), yet scientists know far less about fungal diversity than they do about plants and animals, making this comprehensive catalog a crucial foundation for understanding and protecting Florida's ecosystems.

PubMed

Automated identification of conserved synteny after whole-genome duplication.

2009

Genome research

Catchen JM, Conery JS, Postlethwait JH

Plain English
This study focused on developing a computer system that identifies regions of DNA where genes are conserved across different species after their genomes have duplicated. Researchers created a tool called the Synteny Database, which can analyze both complete and incomplete genomes to help study the evolution of specific gene families. For example, when looking at the ARNTL gene family in various species like zebrafish and humans, this system can detect changes that help us understand how these gene families evolved over time. Who this helps: This helps geneticists and researchers studying evolution and gene families.

PubMed

Inferring ancestral gene order.

2008

Methods in molecular biology (Clifton, N.J.)

Catchen JM, Conery JS, Postlethwait JH

Plain English
This research looked at how genomes, the complete set of DNA in an organism, have changed over time, specifically focusing on the zebrafish. The researchers developed new methods to figure out what the zebrafish's ancient chromosomes looked like, especially after there have been significant changes in their genome due to duplication events. They found that their approach can effectively reconstruct these ancestral chromosomes, providing insights into evolution. Who this helps: This helps scientists studying evolution and genetics.

PubMed

Anticodon-dependent conservation of bacterial tRNA gene sequences.

2007

RNA (New York, N.Y.)

Saks ME, Conery JS

Plain English
This study looked at the genetic sequences of tRNA—molecules that help build proteins—in 145 different bacteria. Researchers found that certain important parts of the tRNA, especially those related to the anticodon (a part that helps tRNA recognize which protein to build), are more similar across different tRNAs than previously thought, even if the tRNAs belong to the same amino acid family. Specifically, they found that certain positions in the anticodon are conserved, indicating they play a critical role in how effectively tRNA functions during protein synthesis. Who this helps: This research benefits scientists studying protein synthesis and could lead to better understanding of bacterial behavior and treatment strategies.

PubMed

Circuit motifs for spatial orientation behaviors identified by neural network optimization.

2007

Journal of neurophysiology

Dunn NA, Conery JS, Lockery SR

Plain English
This study looked at how certain patterns of nerve connections in tiny worms (like the Caenorhabditis elegans) help them perform tasks like climbing to the highest spot or finding a middle point. Researchers found that, while many different nerve networks could achieve these tasks effectively, all hill-climbing nerves fell into three basic patterns, and goal-seeking nerves used two patterns working together. Understanding these basic patterns is important for uncovering how similar behaviors occur in other animals, including humans. Who this helps: This helps researchers and scientists studying nervous systems in various animals.

PubMed

Aligning sequences by minimum description length.

2007

EURASIP journal on bioinformatics & systems biology

Conery JS

Plain English
This research focuses on a new method for aligning genetic sequences, which is important in understanding biological data. The study found that this new approach can produce alignments as accurate as a well-known method called CLUSTALW, while also being efficient in data compression. By using this technique, researchers can manage and analyze genetic information better, which is crucial for advancements in genetics and medicine. Who this helps: This helps researchers and bioinformatics specialists working on genetic data analysis.

PubMed

A neural network model of chemotaxis predicts functions of synaptic connections in the nematode Caenorhabditis elegans.

2004

Journal of computational neuroscience

Dunn NA, Lockery SR, Pierce-Shimomura JT, Conery JS

Plain English
Researchers studied how nerve connections in the tiny worm Caenorhabditis elegans help it navigate toward chemicals in its environment, a process known as chemotaxis. They created a computer model to predict which connections are needed for this behavior and found that all nerve cells have connections that dampen their activity. These findings reveal new roles for known neural pathways and explain how feedback helps the worm respond quickly to chemical signals. Who this helps: This helps researchers studying nervous systems and behaviors in other organisms, including humans.

PubMed

The evolutionary demography of duplicate genes.

2003

Journal of structural and functional genomics

Lynch M, Conery JS

Plain English
This research looked at how genes that are duplicated in animals evolve over time. The scientists found that gene duplication happens at about 1 in every 100,000 genes every million years, but these duplicate genes typically only last around 4 million years. This work helps explain why different species have varying genome sizes and suggests that while many duplicated genes quickly disappear or lose their original function, a few may survive and contribute to important evolutionary changes. Who this helps: This helps researchers studying evolution and genetics.

PubMed

The origins of genome complexity.

2003

Science (New York, N.Y.)

Lynch M, Conery JS

Plain English
This study looked at how the complexity of genomes has increased from simple organisms like bacteria to more complicated ones like plants and animals. Researchers found that as organisms got larger, their genomes gained more genes (up to twice as many) and new elements that help in gene regulation. This matters because it highlights how changes in population size over time played a major role in the evolution of complex life forms. Who this helps: This helps scientists studying evolution and genetic diversity.

PubMed

Nucleotide substitutions and the evolution of duplicate genes.

2001

Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing

Conery JS, Lynch M

Plain English
This study developed a new software tool to examine duplicate genes in a genome by looking closely at their nucleotide sequences. The researchers found that the number of changes in these sequences helps determine when duplicate genes appeared and how they’ve evolved over time. This information is important because it helps scientists understand how genes adapt and function in living organisms. Who this helps: This helps researchers and geneticists studying gene evolution.

PubMed

The evolutionary fate and consequences of duplicate genes.

2000

Science (New York, N.Y.)

Lynch M, Conery JS

Plain English
This study looked at how often genes duplicate in various organisms and what happens to those duplicated genes over time. Researchers found that gene duplicates appear at a rate of about 0.01 per gene every million years, but most of them fade away within a few million years, with only a small number surviving and adapting to new roles. Understanding how duplicate genes work and evolve is important because it may help explain how new species emerge. Who this helps: This helps scientists studying evolution and genetics.

PubMed

Publication data sourced from PubMed . Plain-English summaries generated by AI. Not medical advice.