Joseph J C Thome

Columbia Center for Translational Immunology, Department of Surgery and Department of Microbiology and Immunology, Columbia University Medical Center, NY, New York, 10032, USA.

11 publications 2013 – 2019

What does Joseph J C Thome research?

Joseph J C Thome studies human immunology, particularly by analyzing tissues and blood from deceased organ donors. This unique approach allows him to look at immune cells in their natural environment rather than just in blood samples. He examines how different conditions, like the cause of death and any infections the donor had, can change the immune response. This information is crucial for making sense of how these immune cells behave and how they can be used in research related to therapies and treatments.

Key findings

  • Clinical factors such as the cause of death and presence of infection significantly alter immune cell profiles, impacting both organ tissue and blood.
  • Findings indicate that variations due to hospitalization can lead to differing immune parameters, which should be considered in immunology studies.
  • The study shows that using organ donor tissues without considering these clinical variations can lead to misleading results in research.

Frequently asked questions

Does Dr. Thome study immune response in patients?
Yes, he focuses on the human immune response by studying immune cells from deceased organ donors.
What factors does Dr. Thome consider in his research?
He examines how clinical factors like cause of death and infections during hospitalization affect immune cell profiles.
Is Dr. Thome's work relevant for understanding treatments for diseases?
Yes, his findings about immune cell behavior can help improve research related to immune-based therapies.

Publications in plain English

Spatial and Temporal Mapping of Human Innate Lymphoid Cells Reveals Elements of Tissue Specificity.

2019

Immunity

Yudanin NA, Schmitz F, Flamar AL, Thome JJC, Tait Wojno E +7 more

Plain English
This study examined a type of immune cell called innate lymphoid cells (ILCs) in healthy human organ donors to understand how they are distributed in different tissues. The researchers found that human ILCs are more varied in their locations compared to those in mice, with significant differences in ILCs related to obesity and aging. Specifically, the ILC1 cells showed unique distribution patterns that depended on the tissue type, which may impact how the immune system functions in different health conditions. Who this helps: This research benefits doctors and scientists studying immune responses in humans, especially concerning obesity and aging-related health issues.

PubMed

Human immunology studies using organ donors: Impact of clinical variations on immune parameters in tissues and circulation.

2018

American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons

Carpenter DJ, Granot T, Matsuoka N, Senda T, Kumar BV +10 more

Plain English
Deceased organ donors represent a rare opportunity to study human immune cells directly from tissues rather than just blood. This paper shows that clinical factors during the donor's hospitalization—such as cause of death, infection, and time in the ICU—significantly alter immune cell profiles in organs and blood. These variations must be accounted for when using donor tissues for immunology research.

PubMed

An atlas of B-cell clonal distribution in the human body.

2017

Nature biotechnology

Meng W, Zhang B, Schwartz GW, Rosenfeld AM, Ren D +10 more

Plain English
This study looked at how B-cells, which are important for our immune response, are distributed throughout different parts of the human body. Researchers examined over 933,000 B-cell lineages from six organ donors and found that B-cells form two main groups: one group circulates through the blood and organs like the spleen and lungs, while the other is mostly found in the gastrointestinal tract. The GI-related B-cells showed a lot of shared genetic characteristics, indicating they frequently expand and adapt, which is important for fighting infections and diseases. Who this helps: Patients needing improved treatments for infections, autoimmune diseases, and cancer.

PubMed

Tissue reservoirs of antiviral T cell immunity in persistent human CMV infection.

2017

The Journal of experimental medicine

Gordon CL, Miron M, Thome JJ, Matsuoka N, Weiner J +6 more

Plain English
This study looked at how our body’s immune T cells respond to a common virus called cytomegalovirus (CMV) in different parts of the body, not just in the blood. Researchers examined samples from 44 people with CMV and found that T cells specific to this virus were most concentrated in the blood and bone marrow, while they were also present in the lung where the virus could still be detected. This matters because understanding these immune responses in various tissues helps to better grasp how our bodies manage long-term infections like CMV and may inform future treatments. Who this helps: This research benefits patients with CMV and doctors treating viral infections.

PubMed

Dendritic Cells Display Subset and Tissue-Specific Maturation Dynamics over Human Life.

2017

Immunity

Granot T, Senda T, Carpenter DJ, Matsuoka N, Weiner J +10 more

Plain English
This study looked at how a type of immune cell called dendritic cells (DCs) changes and moves in different parts of the body as people age. Researchers examined samples from 78 individuals, discovering that a specific type of DC, known as cDC2, is most prevalent in lymph nodes related to the lungs and plays a key role in protecting mucosal tissues throughout life. This information is important because it helps us understand how the immune system monitors and responds to threats in different body tissues from childhood to old age. Who this helps: This research benefits patients by informing new treatments for immune-related conditions.

PubMed

Early-life compartmentalization of human T cell differentiation and regulatory function in mucosal and lymphoid tissues.

2016

Nature medicine

Thome JJ, Bickham KL, Ohmura Y, Kubota M, Matsuoka N +6 more

Plain English
This study looked at how T cells, a key part of the immune system, develop and function in young children compared to adults. Researchers found that in children under two, T cells in their tissues are mostly immature, while adult tissues have a lot of memory T cells. Notably, about 30-40% of the T cells in children’s tissues are regulatory T cells that help keep the immune system in check, compared to just 1-10% in adults. Understanding these differences is important because it shows how young children's immune systems learn to respond to new infections without overreacting. Who this helps: This helps pediatricians and researchers studying immune responses in infants and young children.

PubMed

Longterm maintenance of human naive T cells throughhomeostasis in lymphoid tissue sites.

2016

Science immunology

Thome JJ, Grinshpun B, Kumar BV, Kubota M, Ohmura Y +4 more

Plain English
This study looked at how human naïve T cells, which are important for fighting new infections, develop and stay in the body as we age. Researchers found that in people over 40, there's a sharp drop in the production of new T cells in the thymus, but T cells continue to be maintained mostly in lymph nodes. Surprisingly, they discovered that these T cells form unique groups that don’t easily mix between different lymphoid tissues. Who this helps: This research benefits patients by providing insights into how their immune system can remain effective throughout life.

PubMed

Emerging concepts in tissue-resident T cells: lessons from humans.

2015

Trends in immunology

Thome JJ, Farber DL

Plain English
This research focused on understanding how specialized T cells in the body, called tissue-resident memory T cells (TRM), function and persist, especially outside of the blood. The study found that these TRM cells are widely distributed in various body tissues and are present in high numbers, which is crucial for rapid immune responses when the body encounters infections again. This knowledge matters because it enhances our understanding of how to improve vaccines and immunotherapies by targeting these key immune cells. Who this helps: This helps patients needing better vaccination responses and improved treatments for infections.

PubMed

Spatial map of human T cell compartmentalization and maintenance over decades of life.

2014

Cell

Thome JJ, Yudanin N, Ohmura Y, Kubota M, Grinshpun B +5 more

Plain English
This study examined how T cells, a type of immune cell, are organized and maintained in different parts of the body over six decades of life, using samples from 56 organ donors. Researchers found that the location and behavior of T cells depend significantly on their type and where they are located in the body, with key differences between CD4+ and CD8+ T cells that cannot be understood solely by looking at blood samples. This research is important because it helps us understand how T cells function and develop, which can lead to better treatments for immune-related diseases. Who this helps: Patients with immune disorders and doctors treating them.

PubMed

Distribution and compartmentalization of human circulating and tissue-resident memory T cell subsets.

2013

Immunity

Sathaliyawala T, Kubota M, Yudanin N, Turner D, Camp P +7 more

Plain English
This study looked at different types of T cells, which are important for our immune system, in various human tissues rather than just in blood samples. Researchers found that certain types of T cells, like CD4(+) and CD8(+) cells, behave differently based on where they are in the body, with CD4(+) cells being more active in mucosal tissues and CD8(+) cells remaining mostly in a "naive" state in lymphoid tissues. This information is significant because it helps us better understand how our immune response is organized and can lead to improved treatments for diseases. Who this helps: This benefits researchers and doctors working on immune-related diseases and therapies.

PubMed

The lectin domain of the polypeptide GalNAc transferase family of glycosyltransferases (ppGalNAc Ts) acts as a switch directing glycopeptide substrate glycosylation in an N- or C-terminal direction, further controlling mucin type O-glycosylation.

2013

The Journal of biological chemistry

Gerken TA, Revoredo L, Thome JJ, Tabak LA, Vester-Christensen MB +6 more

Plain English
This study looked at a group of enzymes called polypeptide GalNAc transferases (ppGalNAc Ts) and how they add sugar molecules to proteins, which is important for many bodily functions. The researchers found that where the sugar is located on the protein—either at the beginning or the end—affects how effectively these enzymes work. Specifically, some enzymes prefer sugars at the end of the protein, while others like them at the beginning, and this could impact how proteins in our bodies are regulated. Who this helps: This research benefits scientists and doctors who study diseases related to protein function and sugar addition.

PubMed

Publication data sourced from PubMed . Plain-English summaries generated by AI. Not medical advice.