Maria Ciaramella

Department of Surgery, Division of Vascular and Endovascular Surgery, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA.

50 publications 2004 – 2026 ORCID

What does Maria Ciaramella research?

Maria Ciaramella studies how various factors affect the recovery and survival of patients who undergo emergency surgery, particularly for life-threatening conditions like ruptured abdominal aortic aneurysms. In her research, she examined whether the frailty score—which assesses a person's overall health and vulnerability—can predict complications or mortality rates following such surgeries. Her findings indicate that what matters more than frailty is the patient's immediate medical condition upon arrival at the hospital, including critical factors like low blood pressure and kidney issues.

Key findings

  • Frailty did not predict postoperative outcomes; 43% mortality for frail patients compared to 33% for non-frail patients.
  • The patient's critical condition at the time of surgery was more important than their frailty score for predicting outcomes.
  • The study involved 60 patients with ruptured abdominal aortic aneurysms.

Frequently asked questions

Does Dr. Ciaramella study frailty in surgical patients?
Yes, she investigates the role of frailty in predicting outcomes after emergency surgeries.
What types of surgeries does Dr. Ciaramella research?
She focuses primarily on emergency surgeries for life-threatening conditions, particularly ruptured abdominal aortic aneurysms.
Is Dr. Ciaramella's work relevant to older adults?
Yes, her research is especially relevant to older adults, as frailty is common in this age group and impacts surgical decision-making.

Publications in plain English

Outcomes among hemodialysis-dependent patients undergoing infrapopliteal revascularization for chronic limb-threatening ischemia.

2026

Journal of vascular surgery

Darling JD, van Galen IF, Guetter CR, Park J, Ciaramella M +7 more

Plain English
This study looked at patients who need hemodialysis and have serious leg circulation problems, specifically those undergoing two types of surgery to improve blood flow: bypass surgery (BPG) and angioplasty (PTA/S). It found that after two years, 20% of the bypass patients needed major amputations compared to 32% of those who received angioplasty, showing that bypass surgery might offer better protection against amputations. Patients who had bypass also had a 45% lower risk of amputation or death over five years than those who had angioplasty, emphasizing that choosing bypass surgery could lead to better long-term outcomes for these high-risk patients. Who this helps: Patients on hemodialysis facing severe leg issues.

PubMed

Safety and efficacy of escalating antithrombotic therapy after lower extremity revascularization for chronic limb threatening ischemia.

2026

Journal of vascular surgery

Darling JD, Schermerhorn JA, Guetter CR, Ciaramella MA, van Galen IF +8 more

Plain English
This study looked at the safety and effectiveness of different blood-thinning treatments given to patients who had surgery to improve blood flow in their legs due to serious circulation problems. Researchers found that patients on more aggressive blood-thinning regimens had higher rates of bleeding; for example, the bleeding rate was 15% in those on triple therapy compared to just 1.5% for those on standard single therapy. This is important because it shows that while improving blood flow is vital, the increased risk of bleeding can lead to poorer survival rates, highlighting the need for careful treatment planning. Who this helps: This helps patients undergoing leg revascularization, their doctors, and healthcare providers who need to manage risks effectively.

PubMed

The Modified Harborview Risk Score Successfully Predicts Mortality after Ruptured Abdominal Aortic Aneurysm Repair.

2025

Annals of vascular surgery

McGevna MA, Adler LSF, Ciaramella MA, Hamilton CA, Truong H +3 more

Plain English
This study looked at a new way to predict the risk of dying within 30 days after surgery for a ruptured abdominal aortic aneurysm (rAAA), called the modified Harborview Risk Score (mHRS). Researchers analyzed data from 69 patients and found that the overall death rate was 38%, with 30% for those who had a less invasive surgery and 58% for those who had open surgery. The mHRS was found to be a more effective tool for predicting mortality than the traditional score, and it uses simpler tests that are easier for doctors to obtain. Who this helps: This benefits doctors and their patients by providing a better way to assess surgery risks.

PubMed

The Modified Frailty Index-11 is a Poor Predictor of 1-Year Mortality and Morbidity After Ruptured Abdominal Aortic Aneurysm Repair.

2025

Annals of vascular surgery

McGevna MA, Adler LSF, Lu JY, Ciaramella MA, Rahimi SA +1 more

Plain English
This study looked at whether the modified frailty index (mFI-11) could be used to predict how likely patients were to experience death or health problems one year after surgery for a ruptured abdominal aortic aneurysm (rAAA). Researchers analyzed 78 patients and found that the overall one-year death rate was 40%, with 49% of frail patients dying compared to 33% of non-frail patients, but the differences weren't statistically significant. The findings suggest that the mFI-11 isn't a reliable tool for predicting long-term outcomes after rAAA repair, highlighting the need for better risk assessment methods. Who this helps: This helps doctors and healthcare teams better understand how to evaluate and counsel patients after rAAA surgery.

PubMed

Vascular Intervention for the Diabetic Foot.

2025

Clinics in podiatric medicine and surgery

Ciaramella M, Darling J, Stangenberg L

Plain English
This study focused on how to effectively treat patients with severe circulation problems in their legs due to diabetes. It found that using specific classification systems can help doctors assess the risk of leg injuries and recommend better treatment strategies. For those experiencing their first major circulation issues and who are good candidates for surgery, starting with a bypass procedure is often the best option. Who this helps: This helps patients with diabetes who are at risk of losing their limbs.

PubMed

Unplanned Stenting for Treatment of Distal Endpoint Issues During Carotid Endarterectomy.

2024

European journal of vascular and endovascular surgery : the official journal of the European Society for Vascular Surgery

Ciaramella MA, Liang P, Hamdan AD, Wyers MC, Schermerhorn ML +1 more

PubMed

Lower Extremity Bypass for Occlusive Disease: A Brief History.

2024

Annals of vascular surgery

Ciaramella M, LoGerfo F, Liang P

Plain English
This paper reviews the history and advancements in lower extremity bypass surgery, which treats blockages in the arteries of the legs. Key milestones over the last century include the first femoral-to-popliteal artery bypass in 1948 and improvements in surgical techniques and materials that have broadened treatment options for patients with complex arterial disease. Understanding these developments is important because they have significantly improved the effectiveness and safety of surgeries for those with severe leg circulation problems. Who this helps: Patients with peripheral arterial disease and their doctors.

PubMed

Bailout Distal Internal Carotid Artery Stenting after Carotid Endarterectomy: Indications, Technique, and Outcomes.

2024

Annals of vascular surgery

Ciaramella MA, Liang P, Hamdan AD, Wyers MC, Schermerhorn ML +1 more

Plain English
This study looked at a procedure called distal internal carotid artery (ICA) stenting, used when traditional surgery (carotid endarterectomy) doesn't work as planned due to complications. The researchers reviewed six male patients aged 63 to 82, all of whom had successful stenting procedures, leading to no new strokes or serious issues after a follow-up of 17 months. This finding shows that distal ICA stenting is effective for handling complications during carotid surgery, which can prevent more dangerous and complex surgeries. Who this helps: This benefits patients undergoing carotid surgery, particularly those facing complications.

PubMed

Promotion of Resilience in Migrants: A Systematic Review of Study and Psychosocial Intervention.

2022

Journal of immigrant and minority health

Ciaramella M, Monacelli N, Cocimano LCE

Plain English
This research reviewed 90 studies to understand how resilience is defined and supported in migrants through various psychosocial programs. The findings showed that resilience is often poorly defined and that different experiences of migration were not considered in these programs, leading to very few effective interventions being identified. This matters because better understanding and support can help migrants cope with the challenges they face in their new environments. Who this helps: This helps migrants and the professionals working to support them.

PubMed

Intraoperative Vascular Assistance: Essential to an Institution's Ability to Provide Surgical Care.

2022

Annals of vascular surgery

Soto C, Tarabey S, Hamilton C, Ciaramella MA, Malanowski A +2 more

Plain English
This study looked at how vascular surgeons helped with various surgeries over nearly a decade, analyzing 437 cases where their expertise was needed. It found that 39% of these cases involved urgent situations, and vascular surgeons played a vital role in addressing complications, with a hospital death rate of 12.1%. This research highlights how important vascular surgeons are in ensuring safe surgical care across different types of surgeries. Who this helps: This benefits patients undergoing surgery, especially those with complex or urgent needs.

PubMed

Female sex is associated with reintervention and mortality following elective endovascular abdominal aortic aneurysm repair.

2022

Journal of vascular surgery

Corsi T, Ciaramella MA, Palte NK, Carlson JP, Rahimi SA +1 more

Plain English
This study looked at the outcomes for women and men following elective surgery to repair abdominal aortic aneurysms, specifically focusing on how sex affects recovery and survival rates. Researchers reviewed records of 273 patients and found that women experienced higher rates of complications and lower survival rates over five years—48% of women survived compared to 65% of men. It also showed that women were more likely to be readmitted within 30 days after surgery, with an 18% rate for women versus 8% for men. Who this helps: This information is important for doctors treating women with abdominal aortic aneurysms, helping them better understand the risks and manage care accordingly.

PubMed

A 30-Year-Old Man with an Unusually Large Untreated Plantar Fibrolipoma That Disrupted Ambulation and Required Operative Excision.

2022

Journal of the American Podiatric Medical Association

Positano RC, Trepal MJ, Ciaramella M, Positano RG

Plain English
A 30-year-old man had a large, painful lump on the bottom of his foot that made it hard for him to walk, even after trying to adjust his shoes. After surgery to remove the lump, which was found to be a fibrolipoma, he was able to wear regular shoes and return to all his activities. This is important because if such growths aren’t treated, they can lead to serious mobility issues, especially for people whose jobs involve a lot of standing or walking. Who this helps: This helps patients with foot lumps and their doctors.

PubMed

Modern mortality risk stratification scores accurately and equally predict real-world postoperative mortality after ruptured abdominal aortic aneurysm.

2021

Journal of vascular surgery

Ciaramella MA, Ventarola D, Ady J, Rahimi S, Beckerman WE

Plain English
This study looked at three scoring systems used to predict the chances of survival after surgery for patients with a ruptured abdominal aortic aneurysm (rAAA). Researchers found that out of 49 patients who had surgery, 37% died in the hospital, with a higher risk (63%) for those who had open surgery compared to those who had endovascular repair (24%). These findings are important because they show that the HMC, VSGNE, and DAS scores are equally effective at estimating mortality risk, helping doctors make better decisions about treatment options before surgery. Who this helps: This helps doctors and patients involved in rAAA surgeries.

PubMed

Frailty is a Poor Predictor of Postoperative Morbidity and Mortality After Ruptured Abdominal Aortic Aneurysm.

2021

Annals of vascular surgery

Ciaramella M, Kravchenko T, Grieff A, Huang S, Rahimi S +1 more

Plain English
Doctors tested whether a "frailty score"—a measure of a patient's overall weakness and health problems—could predict which patients would die or have serious complications after emergency surgery for a ruptured aortic aneurysm (a life-threatening tear in the main blood vessel from the heart). They found that frailty made almost no difference: patients who were frail and those who weren't had similar death rates (43% vs. 33%) and similar complication rates. The study shows that for this type of emergency surgery, a patient's fragile baseline health matters far less than how sick they are at the moment they arrive for surgery—meaning doctors should focus on what's happening right now rather than assuming elderly or weak patients will definitely do worse.

PubMed

[Quality of professional life of working with asylum seekers: compassion satisfaction, burnout and secondary traumatic stress in reception professionals].

2020

Giornale italiano di medicina del lavoro ed ergonomia

Ciaramella M, Monacelli N

Plain English
This study looked at the well-being of professionals working in Italian centers for asylum seekers. Researchers found that, while most of these workers feel satisfied with their jobs, there are three distinct groups: one group experiences high burnout, another feels very fulfilled in their work, and a third group faces both burnout and secondary traumatic stress from the traumatic experiences of the asylum seekers they help. These findings are important because they highlight the need for better support and training for these professionals to improve their mental health and job satisfaction. Who this helps: This helps the reception professionals and their organizations.

PubMed

The DNA Alkylguanine DNA Alkyltransferase-2 (AGT-2) Of Caenorhabditis Elegans Is Involved In Meiosis And Early Development Under Physiological Conditions.

2019

Scientific reports

Serpe M, Forenza C, Adamo A, Russo N, Perugino G +2 more

Plain English
Researchers studied a protein called AGT-2 in a small worm called C. elegans to see how it affects cell development and reproduction. They found that when AGT-2 was reduced or blocked, more germ cells were damaged, leading to fewer healthy offspring. This matters because it shows that AGT proteins play roles beyond just repairing DNA damage, which could impact our understanding of fertility and development. Who this helps: This helps researchers and scientists working on fertility and cancer treatments.

PubMed

Angioleiomyoma (Vascular Leiomyoma) Presenting as a Pseudoaneurysm of the Tibialis Posterior Artery.

2019

Journal of the American Podiatric Medical Association

Ciaramella MA, Positano RC, Schneider DB, Doolan JJ, Forlines M +1 more

Plain English
This study looked at a 55-year-old woman who had pain in her left heel and ankle. Doctors discovered and removed a growth called an angioleiomyoma near an important artery in her leg, which appeared similar to a pseudoaneurysm. Identifying this type of growth is important for correctly diagnosing and treating similar conditions, especially in middle-aged women. Who this helps: Patients who might have similar vascular issues in their legs.

PubMed

New Insights into Structural and Functional Roles of Indole-3-acetic acid (IAA): Changes in DNA Topology and Gene Expression in Bacteria.

2019

Biomolecules

Defez R, Valenti A, Andreozzi A, Romano S, Ciaramella M +3 more

Plain English
This study examined how a plant hormone called indole-3-acetic acid (IAA) affects the DNA and gene expression in two different types of bacteria. The researchers found that when bacteria were treated with IAA, the shape of their DNA changed, which in turn led to the activation of certain genes, including those involved in fixing nitrogen. This is important because understanding how IAA influences DNA and gene activity could help us learn more about how this hormone works not just in plants, but in other organisms too. Who this helps: This research benefits scientists and researchers studying plant and bacterial biology.

PubMed

Structure and Properties of DNA Molecules Over The Full Range of Biologically Relevant Supercoiling States.

2018

Scientific reports

Bettotti P, Visone V, Lunelli L, Perugino G, Ciaramella M +1 more

Plain English
This study examined how the shape of DNA, specifically its supercoiling (which is how tightly the DNA strands twist), affects its properties and functions. The research found important differences between positively and negatively supercoiled DNA, using a method called Atomic Force Microscopy to analyze the structures. Understanding these differences is crucial because they influence key cellular processes, like how genes are expressed and how DNA is replicated. Who this helps: This helps researchers and medical professionals working on genetic disorders and therapies.

PubMed

Fin healing and regeneration in sturgeon.

2018

Journal of fish biology

Allen PJ, Baumgartner W, Brinkman E, DeVries RJ, Stewart HA +5 more

Plain English
This study looked at how juvenile Atlantic sturgeon heal their pectoral fins after different types of fin injuries. Researchers found that fish with the entire leading fin spine removed healed slower compared to those with smaller pieces taken out, showing that it took longer for the bone to mineralize in more extensive injuries. Throughout the experiment, the fish grew from an average weight of 1.8 kg to 3.2 kg, and nearly all survived, with only one fish dying for unknown reasons. Who this helps: This research benefits fishery biologists and conservationists interested in the health and management of sturgeon populations.

PubMed

Interdomain interactions rearrangements control the reaction steps of a thermostable DNA alkyltransferase.

2017

Biochimica et biophysica acta. General subjects

Morrone C, Miggiano R, Serpe M, Massarotti A, Valenti A +6 more

Plain English
This study looked at a type of protein called alkyltransferase that helps repair damage in DNA caused by certain drugs. Researchers analyzed how this protein changes shape during its repair process and found that when the protein interacts with damaged DNA, it undergoes specific changes that help it function properly. Understanding these changes is important because it could lead to new ways to improve cancer treatments that involve alkylating drugs. Who this helps: This helps patients undergoing chemotherapy, particularly those affected by DNA damage repair issues.

PubMed

Proteomic approach to characterize biochemistry of meat quality defects.

2017

Meat science

Schilling MW, Suman SP, Zhang X, Nair MN, Desai MA +3 more

Plain English
This study looked at the proteins in different types of meat to understand why some have quality problems, like being pale or tough. It found 15 proteins that were different in pale, soft chicken meat compared to normal meat, and 8 proteins that showed differences in tougher chicken breast. The research is important because knowing which proteins are involved in these defects can help improve meat quality and prevent these issues in the future. Who this helps: This helps farmers, meat producers, and consumers who want better quality meat.

PubMed

In vivo and in vitro protein imaging in thermophilic archaea by exploiting a novel protein tag.

2017

PloS one

Visone V, Han W, Perugino G, Del Monaco G, She Q +3 more

Plain English
This research focused on developing a new method to visualize proteins in a type of heat-loving microorganism called Sulfolobus islandicus. The scientists created a unique protein tag, called H5, that can be attached to proteins, enabling them to see proteins in live cells for the first time. They found that their method successfully allowed them to track specific proteins, demonstrating a major advancement in studying these extreme organisms. Who this helps: This benefits researchers studying extremophiles and their unique biological processes.

PubMed

Every OGT Is Illuminated … by Fluorescent and Synchrotron Lights.

2017

International journal of molecular sciences

Miggiano R, Valenti A, Rossi F, Rizzi M, Perugino G +1 more

Plain English
This research paper focuses on a group of proteins called OGTs, which help repair damaged DNA that can result from environmental pollutants or chemotherapy. The study specifically examines two types of OGTs from bacteria and archaea, revealing important details about how these proteins function and their role in helping these microorganisms survive. Understanding how OGTs work is crucial because it can inform treatments for diseases like cancer and improve our knowledge of DNA repair mechanisms. Who this helps: This helps patients undergoing chemotherapy and researchers studying DNA repair.

PubMed

A novel thermostable protein-tag: optimization of the Sulfolobus solfataricus DNA- alkyl-transferase by protein engineering.

2016

Extremophiles : life under extreme conditions

Vettone A, Serpe M, Hidalgo A, Berenguer J, del Monaco G +4 more

Plain English
This study focused on improving a protein tag called SsOGT-H5, derived from a heat-loving organism, to make it more effective in extreme environments. Researchers found that SsOGT-H5 works as well as the existing SNAP-tag technology for labeling proteins while being much more stable at high temperatures. This advancement is important because it allows scientists to study proteins in organisms that thrive in extreme conditions, which could lead to new discoveries in biology and medicine. Who this helps: This benefits researchers working with extremophile organisms and developing new biotechnological applications.

PubMed

Crystal structure of Mycobacterium tuberculosis O6-methylguanine-DNA methyltransferase protein clusters assembled on to damaged DNA.

2016

The Biochemical journal

Miggiano R, Perugino G, Ciaramella M, Serpe M, Rejman D +6 more

Plain English
This study looked at a protein from the bacteria that cause tuberculosis and how it interacts with damaged DNA. Researchers discovered the structure of the protein when it binds to DNA that has been chemically altered, providing insights into how it repairs this damage. They found that the protein can connect to multiple copies of itself on the same damaged DNA, which may help it repair the DNA effectively. Who this helps: This helps researchers and doctors understand how tuberculosis bacteria resist treatment, potentially guiding better therapies for patients.

PubMed

Erratum to: A novel thermostable protein-tag: optimization of the Sulfolobus solfataricus DNA-alkyl-transferase by protein engineering.

2016

Extremophiles : life under extreme conditions

Vettone A, Serpe M, Hidalgo A, Berenguer J, Del Monaco G +4 more

PubMed

RNA topoisomerase is prevalent in all domains of life and associates with polyribosomes in animals.

2016

Nucleic acids research

Ahmad M, Xue Y, Lee SK, Martindale JL, Shen W +16 more

Plain English
This study focused on a type of enzyme called RNA topoisomerases, which help manage RNA during its use in cells across different life forms, including bacteria, archaea, and animals. The researchers found that these enzymes play a crucial role in mRNA translation, particularly in animals, where they work with structures called polyribosomes to help produce proteins. For example, the human Top3β enzyme requires a specific part to function properly, unlike its counterparts in bacteria and yeast, showing that these enzymes have evolved unique mechanisms. Who this helps: This research benefits scientists exploring RNA functions and could aid in developing treatments targeting specific diseases related to RNA processing.

PubMed

The Effects of Sequential Environmental and Harvest Stressors on the Sensory Characteristics of Cultured Channel Catfish (Ictalurus Punctatus) Fillets.

2016

Journal of food science

Ciaramella MA, Kim T, Avery JL, Allen PJ, Schilling MW

Plain English
This study looked at how different stress factors, like temperature and oxygen levels, affect the quality of catfish fillets. It found that while higher stress levels during growing conditions led to a decrease in the yield of fillets, catfish from the most stressed environment actually scored higher in taste tests. Overall, the differences in flavor were small, and most fillets, regardless of the stress level, were still liked by consumers. Who this helps: This helps fish farmers and seafood consumers by ensuring better quality in catfish products.

PubMed

Differential abundance of muscle proteome in cultured channel catfish (Ictalurus punctatus) subjected to ante-mortem stressors and its impact on fillet quality.

2016

Comparative biochemistry and physiology. Part D, Genomics & proteomics

Ciaramella MA, Nair MN, Suman SP, Allen PJ, Schilling MW

Plain English
This study looked at how stress from temperature and oxygen levels affects muscle quality in channel catfish. Researchers found that fish exposed to stress had lower color quality and changes in texture, with significant alterations in the muscle proteins. For example, levels of certain proteins important for muscle structure decreased, which may explain why the fillet quality suffered. This research is important because it helps improve the handling and farming of catfish to maintain better quality in their meat, which is crucial for consumers. Who this helps: This helps fish farmers and seafood consumers.

PubMed

Structure-function relationships governing activity and stability of a DNA alkylation damage repair thermostable protein.

2015

Nucleic acids research

Perugino G, Miggiano R, Serpe M, Vettone A, Valenti A +5 more

Plain English
This study examined a specific protein called SsOGT, which helps repair damaged DNA caused by alkylating agents, substances commonly involved in certain cancer treatments. Researchers found that SsOGT is exceptionally stable, allowing them to analyze how it changes during and after the DNA repair process. These findings are important because they improve our understanding of how this protein works, which could lead to better cancer treatments by targeting DNA damage more effectively. Who this helps: Patients undergoing chemotherapy treatments.

PubMed

NurA Is Endowed with Endo- and Exonuclease Activities that Are Modulated by HerA: New Insight into Their Role in DNA-End Processing.

2015

PloS one

De Falco M, Catalano F, Rossi M, Ciaramella M, De Felice M

Plain English
This study looked at two enzymes, NurA and HerA, found in certain heat-loving microorganisms, to understand how they help repair broken DNA. The researchers discovered that NurA can cut DNA in different ways, working on both straight and circular DNA pieces, and its ability to cut does not strictly need HerA to function. This matters because understanding how these enzymes work together can improve our knowledge of DNA repair processes, which is critical for biological and medical applications. Who this helps: This helps scientists and researchers studying DNA repair mechanisms.

PubMed

The reverse gyrase from Pyrobaculum calidifontis, a novel extremely thermophilic DNA topoisomerase endowed with DNA unwinding and annealing activities.

2014

The Journal of biological chemistry

Jamroze A, Perugino G, Valenti A, Rashid N, Rossi M +2 more

Plain English
This study looked at a special enzyme called reverse gyrase from a type of bacteria that can survive in extremely hot environments. Researchers found that this enzyme, named PcalRG, is the strongest and most efficient reverse gyrase known, working well under various conditions. It has the ability to unwind and join DNA strands, which is important for keeping the genetic material stable. Who this helps: This research benefits scientists studying DNA and those developing therapies for genetic disorders.

PubMed

Genome stability: recent insights in the topoisomerase reverse gyrase and thermophilic DNA alkyltransferase.

2014

Extremophiles : life under extreme conditions

Vettone A, Perugino G, Rossi M, Valenti A, Ciaramella M

Plain English
This study looked at how certain heat-loving microorganisms can protect their DNA from damage caused by high temperatures and other factors. Researchers focused on two specific enzymes, reverse gyrase and DNA alkyltransferase, that help these organisms fix and maintain their genetic material. Understanding how these enzymes work is important because it can help us learn more about DNA repair mechanisms, which are crucial for preventing diseases like cancer in humans. Who this helps: This information benefits researchers and doctors looking for new ways to understand and treat genetic diseases.

PubMed

Chromatin structure and dynamics in hot environments: architectural proteins and DNA topoisomerases of thermophilic archaea.

2014

International journal of molecular sciences

Visone V, Vettone A, Serpe M, Valenti A, Perugino G +2 more

Plain English
This study looks at how certain proteins help stabilize DNA in extremely hot environments, specifically in a group of organisms called thermophilic archaea that thrive at temperatures above 80°C. Researchers found that these proteins, called architectural proteins and DNA topoisomerases, play crucial roles in maintaining the structure and function of DNA despite the heat, ensuring that key processes like replication and repair can still occur. Understanding how these mechanisms work is important because it can inform us about how life can exist in extreme conditions and may also have applications in biotechnology. Who this helps: This helps scientists studying extreme environments and potentially engineers working on heat-resistant biotechnologies.

PubMed

Biochemical and structural studies of the Mycobacterium tuberculosis O6-methylguanine methyltransferase and mutated variants.

2013

Journal of bacteriology

Miggiano R, Casazza V, Garavaglia S, Ciaramella M, Perugino G +2 more

Plain English
This study focused on a protein in the tuberculosis bacteria called O6-methylguanine-DNA methyltransferase (OGT), which helps repair DNA damage. Researchers found that certain mutated versions of this protein, specifically those with changes at positions 15 and 37, worked less effectively because they didn't bind as well to damaged DNA. Understanding these mutations is important because it could shed light on how different strains of tuberculosis develop and survive, affecting treatments and control measures. Who this helps: This helps doctors and researchers working on tuberculosis treatment and prevention.

PubMed

Activity and regulation of archaeal DNA alkyltransferase: conserved protein involved in repair of DNA alkylation damage.

2012

The Journal of biological chemistry

Perugino G, Vettone A, Illiano G, Valenti A, Ferrara MC +2 more

Plain English
This study examined a protein called DNA alkyltransferase from a heat-loving microorganism, which plays a crucial role in repairing damage caused by harmful chemicals that can alter DNA. The researchers found that when cells are exposed to these damaging agents, the production of the repair protein increases, but the protein quickly gets broken down, which helps prevent potential genetic issues. This is important because it highlights a shared protective mechanism across different life forms, including humans, that helps maintain the stability of our genetic material. Who this helps: This research benefits scientists and medical professionals working on cancer prevention and treatment.

PubMed

Synergic and opposing activities of thermophilic RecQ-like helicase and topoisomerase 3 proteins in Holliday junction processing and replication fork stabilization.

2012

The Journal of biological chemistry

Valenti A, De Felice M, Perugino G, Bizard A, Nadal M +2 more

Plain English
This study looked at two important proteins involved in DNA processing, the RecQ-like helicase (Hel112) and topoisomerase 3 (SsTop3), from a heat-loving microorganism. The researchers found that while Hel112 helps to unwind and stabilize certain DNA structures, SsTop3 has a unique role by inhibiting some of Hel112's activity while stabilizing other DNA structures. This is significant because understanding how these proteins work together can shed light on how DNA replication is regulated, which is crucial for maintaining genetic stability and preventing diseases like cancer. Who this helps: This helps researchers and doctors working on genetic disorders and cancer treatments.

PubMed

Positive supercoiling in thermophiles and mesophiles: of the good and evil.

2011

Biochemical Society transactions

Valenti A, Perugino G, Rossi M, Ciaramella M

Plain English
The research studied how DNA structure, called supercoiling, differs in organisms living at normal temperatures and those in extreme heat. It found that both types of organisms can have both negative and positive supercoiling, with positive supercoiling possibly playing a role in important processes like gene expression and chromosome stability. This matters because understanding these mechanisms could lead to better insights into how cells function and adapt to their environments. Who this helps: This helps scientists and researchers studying genetics and cell biology.

PubMed

The archaeal topoisomerase reverse gyrase is a helix-destabilizing protein that unwinds four-way DNA junctions.

2010

The Journal of biological chemistry

Valenti A, Perugino G, Varriale A, D'Auria S, Rossi M +1 more

Plain English
This study looked at how a specific protein called reverse gyrase affects complex DNA shapes, particularly four-way junctions, which can disrupt DNA processes. Researchers found that this protein unwinds these structures without needing energy from ATP, specifically at high temperatures and high protein amounts. This finding is important because it helps us understand how DNA repair and replication might be managed by proteins in extreme environments. Who this helps: This helps researchers studying DNA behavior in microorganisms and may inform medical approaches to DNA repair in human cells.

PubMed

Reverse gyrase and genome stability in hyperthermophilic organisms.

2009

Biochemical Society transactions

Perugino G, Valenti A, D'amaro A, Rossi M, Ciaramella M

Plain English
This study looked at an enzyme called reverse gyrase, which helps stabilize and repair DNA in organisms that thrive in extremely hot environments. The researchers found that this enzyme is crucial for maintaining the integrity of DNA, especially in heat-loving microbes, but they also noted that its exact evolutionary role is still not fully understood. Understanding how reverse gyrase works is important because it can shed light on DNA stability in extreme conditions, which has implications for biotechnology and understanding life's limits. Who this helps: This helps researchers studying heat-resistant organisms and applications in biotechnology.

PubMed

Inhibition of translesion DNA polymerase by archaeal reverse gyrase.

2009

Nucleic acids research

Valenti A, Perugino G, Nohmi T, Rossi M, Ciaramella M

Plain English
This study looked at how a protein called reverse gyrase affects another protein, translesion DNA polymerase (PolY), in a heat-loving microorganism. The researchers discovered that reverse gyrase slows down PolY's activity when DNA is damaged, which helps prevent errors that could lead to mutations. This is important because controlling how these proteins interact could help maintain the stability of the organism's DNA under stress. Who this helps: This research benefits scientists studying DNA repair mechanisms in extreme environments.

PubMed

Dissection of reverse gyrase activities: insight into the evolution of a thermostable molecular machine.

2008

Nucleic acids research

Valenti A, Perugino G, D'Amaro A, Cacace A, Napoli A +2 more

Plain English
This study looked at how reverse gyrase, an enzyme found in heat-loving microbes, works to twist DNA using energy from ATP. Researchers found that two parts of the enzyme work together: one part helps bind to DNA, while the other is responsible for using ATP. Their findings show that these parts communicate and stabilize each other, which is important for the enzyme's function. Who this helps: This helps researchers studying heat-resistant organisms and those exploring DNA processes in various fields, including biotechnology and medicine.

PubMed

The prefoldin of the crenarchaeon Sulfolobus solfataricus.

2008

Protein and peptide letters

D'Amaro A, Valenti A, Napoli A, Rossi M, Ciaramella M

Plain English
This research focused on a protein called prefoldin from a heat-loving microorganism called Sulfolobus solfataricus. The study revealed that this prefoldin can help prevent proteins from clumping together, which is important for their proper function. It was found that the prefoldin levels remain stable even when the microorganism is exposed to extreme temperatures. Who this helps: This benefits researchers studying protein behavior and stability in extreme environments.

PubMed

Lack of strand-specific repair of UV-induced DNA lesions in three genes of the archaeon Sulfolobus solfataricus.

2007

Journal of molecular biology

Romano V, Napoli A, Salerno V, Valenti A, Rossi M +1 more

Plain English
This study looked at how a type of ancient microorganism called archaea repairs damage to its DNA caused by ultraviolet (UV) light. Researchers found that in the three genes they tested, both strands of DNA were repaired equally well, meaning there was no preference for repairing the active strands where genes are being read. This discovery matters because it challenges our understanding of DNA repair processes, which are important for cell survival, especially in organisms like archaea that thrive in extreme environments. Who this helps: This helps researchers studying DNA repair mechanisms in ancient microorganisms and their implications for genetics and biotechnology.

PubMed

Reverse gyrase: an unusual DNA manipulator of hyperthermophilic organisms.

2007

The Italian journal of biochemistry

D'Amaro A, Rossi M, Ciaramella M

Plain English
This research focused on a special enzyme called reverse gyrase, which helps manage DNA in extremely hot-loving organisms (those that thrive above 70 degrees Celsius). The study found that reverse gyrase is found in all organisms that live in very high temperatures but is absent in those that live in moderate temperatures. This is important because it suggests that reverse gyrase helps keep DNA stable in extreme heat, which is crucial for the survival of these heat-loving organisms. Who this helps: This benefits researchers studying extreme environments and the organisms that live there.

PubMed

Selective degradation of reverse gyrase and DNA fragmentation induced by alkylating agent in the archaeon Sulfolobus solfataricus.

2006

Nucleic acids research

Valenti A, Napoli A, Ferrara MC, Nadal M, Rossi M +1 more

Plain English
This study examined how a specific enzyme called reverse gyrase, important for protecting and repairing DNA in certain heat-loving microorganisms, gets broken down when exposed to a chemical called MMS. The researchers found that after MMS treatment, reverse gyrase levels dropped significantly, and nearly all the DNA in the cells was damaged; specifically, they observed major DNA degradation alongside the loss of reverse gyrase. This research highlights the critical role of reverse gyrase in maintaining DNA integrity under stress, which is vital for the survival of these extreme organisms. Who this helps: This helps researchers studying microbial DNA repair and protection strategies in extreme environments.

PubMed

Functional interaction of reverse gyrase with single-strand binding protein of the archaeon Sulfolobus.

2005

Nucleic acids research

Napoli A, Valenti A, Salerno V, Nadal M, Garnier F +2 more

Plain English
This study looked at how a special enzyme called reverse gyrase works with another protein known as single-strand binding protein (SSB) in a heat-loving microorganism called Sulfolobus. The researchers found that SSB helps reverse gyrase perform all its DNA tasks more effectively, including binding to DNA and cutting it. This is important because understanding these interactions can shed light on how DNA is managed and repaired in cells, which can have implications for various biological processes. Who this helps: This research helps scientists studying DNA repair mechanisms and may benefit researchers working on genetic diseases.

PubMed

Another extreme genome: how to live at pH 0.

2005

Trends in microbiology

Ciaramella M, Napoli A, Rossi M

Plain English
This study looked at a microorganism called Picrophilus torridus, which can survive in extremely acidic conditions (pH 0) and high temperatures (65 degrees Celsius). Researchers sequenced its genome and found clues about how it adapts to these harsh environments, though many details are still unknown. Understanding these adaptations can help scientists learn more about life in extreme conditions and may lead to new biotechnological applications. Who this helps: This benefits researchers studying extremophiles and biotechnology applications.

PubMed

Reverse gyrase recruitment to DNA after UV light irradiation in Sulfolobus solfataricus.

2004

The Journal of biological chemistry

Napoli A, Valenti A, Salerno V, Nadal M, Garnier F +2 more

Plain English
This study examined how a special enzyme called reverse gyrase responds to DNA damage caused by UV light in a microorganism known as Sulfolobus solfataricus. Researchers found that after UV exposure, reverse gyrase moved to the damaged DNA and formed stable connections with it, showing that it plays a role in the cell’s response to this type of damage. This is important because it highlights a new mechanism for how cells protect their genetic material from harmful effects, contributing to our understanding of DNA repair processes. Who this helps: This information benefits researchers studying DNA damage and repair, which can lead to advancements in treating various diseases, including cancer.

PubMed

Publication data sourced from PubMed . Plain-English summaries generated by AI. Not medical advice.