Susannah G Tringe

Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.

50 publications 2019 – 2026 ORCID

What does Susannah G Tringe research?

Dr. Tringe studies the role of microorganisms in environmental processes and their interactions with plants and ecosystems. Her research includes examining how bacteria break down pollutants in wastewaters from oil and gas operations, understanding microbial dynamics in Arctic soils, and discovering how crop wild relatives can enhance agricultural resilience against climate change. By investigating these relationships, Tringe aims to improve environmental health, inform waste management practices, and create more sustainable agricultural techniques.

Key findings

  • Developed a new framework for monitoring pollution that combines small-scale sensors and satellite data, aiming to enhance environmental management.
  • Identified that *Janthinobacterium* can survive in harsh environments but fails to degrade hydrocarbons, highlighting potential risks in recycled wastewater from oil and gas.
  • Found that sorghum plants with more diverse root bacteria used nitrogen more efficiently, suggesting ways to improve crop sustainability.
  • Discovered that methane emissions in wetlands are highest at lower salinity levels, indicating potential future risks as sea levels rise.
  • Sequenced the genome of *Fischerella thermalis JSC-11*, revealing its ability to absorb iron, suggesting its potential in bioremediation efforts.

Frequently asked questions

Does Dr. Tringe study the impacts of climate change on Arctic ecosystems?
Yes, she investigates how thawing permafrost and microbial activity affect carbon decomposition in Arctic soils.
What types of pollutants does Dr. Tringe's research focus on?
Her work looks at various environmental contaminants, including those found in wastewater from oil and gas production.
Is Dr. Tringe's work relevant to improving crop production?
Yes, she studies how microbes can enhance crop resilience and nitrogen use efficiency, which is crucial for sustainable agriculture.
What methods does Dr. Tringe use in her studies?
Her research employs genomic sequencing, microbial community analysis, and the development of integrated environmental monitoring frameworks.
How does Dr. Tringe address pollution in her research?
She explores microbial capabilities to degrade pollutants and develop strategies for effective environmental cleanup.

Publications in plain English

In Science Journals.

2026

Science (New York, N.Y.)

Fogg CN, Yeston JS, Vignieri S, Smith KT, Hessler A +10 more

PubMed

Toward an integrative framework for monitoring biodegradation of environmental contaminants across scales.

2026

Current opinion in biotechnology

Yang Y, Chen M, Tringe SG, Mukundan H, Chakraborty R

Plain English
This study looks at how to better track the breakdown of harmful substances in the environment, which come from both natural sources and human activities. Researchers found that while there are various detection methods available—ranging from small-scale sensors to large-scale satellite monitoring—it's difficult to combine their results effectively. The new monitoring framework they propose could improve our ability to measure and manage pollution, using both advanced technology and a unified approach to gather data. Who this helps: This benefits environmental scientists and policymakers working to clean up contaminated areas.

PubMed

Blueprints for sustainable plant production through the utilization of crop wild relatives and their microbiomes.

2025

Nature communications

Waqas M, McCouch SR, Francioli D, Tringe SG, Manzella D +5 more

Plain English
This study focused on the importance of conserving wild plant relatives and the tiny organisms (microbes) that live with them. Researchers found that these wild plants can provide valuable traits that help crops withstand challenges like pests and climate change. This is crucial for ensuring a stable food supply as global agriculture faces increasing pressures. Who this helps: This research benefits farmers and food producers seeking more resilient crops.

PubMed

Unraveling the ecological success ofin a bioreactor treating oil and gas produced water.

2025

Microbiology spectrum

Acharya SM, Yang Y, Enalls BC, Walian PJ, Van Houghton BD +4 more

Plain English
This study explored a type of bacteria called *Janthinobacterium* found in treatment systems that handle wastewater from oil and gas production. Researchers discovered that these bacteria can survive in harsh conditions thanks to special genes that help them cope with high salt, heavy metals, and certain organic materials, but they cannot break down some common pollutants like hydrocarbons. Understanding how these bacteria function is important because they may affect the safety of recycled water and could cause damage in industrial settings, raising concerns about both health and economic costs. Who this helps: This research benefits environmental scientists, engineers, and public health officials monitoring wastewater treatment processes.

PubMed

Root-associated bacterial communities and root metabolite composition are linked to nitrogen use efficiency in sorghum.

2024

mSystems

Chai YN, Qi Y, Goren E, Chiniquy D, Sheflin AM +4 more

Plain English
This study looked at how the bacteria living in the soil around sorghum plants affect the plants' ability to use nitrogen efficiently, which is important for crop production. Researchers tested 24 different types of sorghum under conditions with enough nitrogen and conditions where nitrogen was limited. They found that sorghum plants that used nitrogen more efficiently had more diverse and richer bacterial communities around their roots, and that different root chemicals produced by the plants were linked to these bacterial populations. Understanding these connections can help develop new crop varieties that make better use of nitrogen, which is crucial for sustainable agriculture. Who this helps: This helps farmers and agricultural scientists looking to improve crop efficiency and sustainability.

PubMed

Multiple microbial guilds mediate soil methane cycling along a wetland salinity gradient.

2024

mSystems

Hartman WH, Bueno de Mesquita CP, Theroux SM, Morgan-Lang C, Baldocchi DD +1 more

Plain English
This study explored how different salt levels in wetland environments affect the production of methane, a greenhouse gas. Researchers found that methane emissions were highest in wetlands with lower salt levels (around 3 parts per thousand) and that as salt levels increased, emissions generally declined. This matters because rising sea levels may increase salt levels in freshwater wetlands, potentially leading to higher methane emissions that can impact climate change. Who this helps: This information benefits environmental scientists and policymakers involved in wetland conservation and climate change mitigation efforts.

PubMed

One Health, climate change, and infectious microbes: a joint effort between AGU and ASM to understand impacts of changing climate and microbes on human well-being across scales.

2024

mSphere

Jutla A, Filippelli GM, McMahon KD, Tringe SG, Colwell RR +2 more

PubMed

Disentangling the effects of sulfate and other seawater ions on microbial communities and greenhouse gas emissions in a coastal forested wetland.

2024

ISME communications

Bueno de Mesquita CP, Hartman WH, Ardón M, Tringe SG

Plain English
Researchers studied how seawater, particularly its sulfate content and other minerals, affects tiny organisms in coastal wetlands and the emissions of greenhouse gases like carbon dioxide and methane. They found that exposure to artificial seawater changed the makeup and function of microbial communities and increased greenhouse gas emissions, while sulfate alone did not have a significant effect. This matters because understanding what drives changes in these ecosystems can help us predict the effects of rising sea levels and climate change on coastal wetlands. Who this helps: This research helps environmental scientists and conservationists working to protect wetlands.

PubMed

Genomic insights into redox-driven microbial processes for carbon decomposition in thawing Arctic soils and permafrost.

2024

mSphere

Li Y, Xue Y, Roy Chowdhury T, Graham DE, Tringe SG +2 more

Plain English
This study looked at how microbes in thawing Arctic soils break down carbon and how this might impact climate change. Researchers found that as permafrost thaws, the microbial community shifts significantly, with slower-growing bacteria becoming more dominant over faster-growing ones. Specifically, iron and sulfate-reducing microbes help limit methane production, a potent greenhouse gas, which is crucial as thawed permafrost could accelerate climate change by releasing stored carbon. Who this helps: This research benefits climate scientists and environmental policymakers trying to understand and mitigate the effects of climate change.

PubMed

Methyl-Based Methanogenesis: an Ecological and Genomic Review.

2023

Microbiology and molecular biology reviews : MMBR

Bueno de Mesquita CP, Wu D, Tringe SG

Plain English
This research looked at a specific way some microorganisms produce methane (a greenhouse gas) called methyl-based methanogenesis. The study found that this process is a major source of methane in various settings and highlighted a range of genes and organisms involved in it. Understanding these pathways and their sources is crucial because it can help scientists track and potentially reduce methane emissions, which are significant for climate change. Who this helps: This helps environmental scientists and policymakers aiming to address climate change.

PubMed

Dataset of 143 metagenome-assembled genomes from the Arctic and Atlantic Oceans, including 21 for eukaryotic organisms.

2023

Data in brief

Duncan A, Barry K, Daum C, Eloe-Fadrosh E, Roux S +9 more

Plain English
Researchers studied genetic material from the Arctic and Atlantic Oceans to understand marine life better, collecting samples from surface waters during two research trips. They identified a total of 143 genomes, including 122 from bacteria and 21 from eukaryotic organisms like certain types of algae. This information is important because it helps us learn about marine ecosystems and can guide future research on ocean health and biodiversity. Who this helps: This benefits scientists studying marine biology and environmental health.

PubMed

Correction: Identification of beneficial and detrimental bacteria impacting sorghum responses to drought using multi-scale and multi-system microbiome comparisons.

2023

The ISME journal

Qi M, Berry JC, Veley KM, O'Connor L, Finkel OM +11 more

PubMed

Conservation of beneficial microbes between the rhizosphere and the cyanosphere.

2023

The New phytologist

Zheng Q, Hu Y, Kosina SM, Van Goethem MW, Tringe SG +2 more

Plain English
This study looked at how certain helpful bacteria, found in dry soil surfaces known as biocrusts, contribute to plant growth and nutrient exchange. Researchers discovered that 18 types of bacteria in the cyanosphere (the bacteria around cyanobacteria) were also present in the rhizosphere (the area around plant roots), while 17 additional types were only in the rhizosphere. Specifically, some bacteria significantly boosted the growth of a model grass by over 60% when a certain metabolite they produced was added to its growth medium. Who this helps: This research benefits farmers and environmental scientists working to improve soil health and promote plant growth.

PubMed

Microbial drivers of methane emissions from unrestored industrial salt ponds.

2022

The ISME journal

Zhou J, Theroux SM, Bueno de Mesquita CP, Hartman WH, Tian Y +1 more

Plain English
This study examined how restoring industrial salt ponds impacts tiny organisms in the soil and their methane emissions. The researchers found that unrestored salt ponds released more methane, specifically 5- to 10-times higher emissions compared to restored ponds and natural wetlands. This is important because lowering methane emissions can help combat climate change. Who this helps: This benefits environmental scientists and conservationists working to restore wetlands.

PubMed

Methylphosphonate Degradation and Salt-Tolerance Genes of Two Novel HalophilicMetagenome-Assembled Genomes from Unrestored Solar Salterns.

2022

Genes

Bueno de Mesquita CP, Zhou J, Theroux S, Tringe SG

Plain English
This study focused on two new types of bacteria found in extremely salty environments called solar salterns. Researchers discovered that these bacteria can break down a compound called methylphosphonate and produce methane, which is important for understanding marine ecosystems. The bacteria's genomes revealed that they were more common in the salterns compared to less salty areas, with significant differences noted in how they handle high salt levels. Who this helps: This information benefits researchers studying marine environments and pollution, as well as those working on climate change.

PubMed

Exploring the roles of microbes in facilitating plant adaptation to climate change.

2022

The Biochemical journal

Barnes EM, Tringe SG

Plain English
This study looked at how soil microbes help plants cope with stress caused by climate change. The researchers highlighted that when plants and microbes work together, they can better adapt to challenges in the environment. New tools, like fabricated ecosystems, allow scientists to study these complex interactions more effectively, leading to more reliable results. Who this helps: This helps farmers and agricultural researchers find better ways to improve crop resilience against climate change.

PubMed

Correction: Bueno de Mesquita et al. Methylphosphonate Degradation and Salt-Tolerance Genes of Two Novel HalophilicMetagenome-Assembled Genomes from Unrestored Solar Salterns.2022,, 148.

2022

Genes

Bueno de Mesquita CP, Zhou J, Theroux S, Tringe SG

Plain English
This study focused on analyzing specific genes from two newly identified microorganisms found in salt-rich environments to understand how they break down certain harmful compounds and tolerate high salt levels. The researchers discovered genes that could help these microbes survive in extreme conditions, which could lead to practical applications in biodegradation and bioremediation. This research is important because it helps us find potential solutions for cleaning up polluted environments and developing sustainable practices. Who this helps: This benefits environmental scientists and engineers working on pollution cleanup.

PubMed

Metagenome-assembled genomes of phytoplankton microbiomes from the Arctic and Atlantic Oceans.

2022

Microbiome

Duncan A, Barry K, Daum C, Eloe-Fadrosh E, Roux S +9 more

Plain English
This study looked at tiny plants called phytoplankton and their related microorganisms in the Arctic and Atlantic Oceans. Researchers gathered and analyzed genetic information from these communities, finding 143 high-quality genomic profiles from a total of 50 million genes. They discovered that phytoplankton in the Arctic were more genetically diverse than those in the Atlantic, which is important for understanding how these communities respond to their different environments and contribute to ocean health. Who this helps: This helps scientists and conservationists working to protect ocean ecosystems.

PubMed

Identification of beneficial and detrimental bacteria impacting sorghum responses to drought using multi-scale and multi-system microbiome comparisons.

2022

The ISME journal

Qi M, Berry JC, Veley KM, O'Connor L, Finkel OM +11 more

Plain English
This study focused on understanding how specific bacteria in the soil affect the ability of sorghum, a key cereal crop, to grow during drought conditions. Researchers found that two types of bacteria, Arthrobacter, negatively impacted root growth in sorghum, while another type, Variovorax, helped protect the plants from this negative effect. The findings showed that plants with both Arthrobacter and Variovorax had similar or better growth compared to healthy plants, highlighting the importance of the right bacteria in improving sorghum resilience to drought. Who this helps: This benefits farmers and agricultural scientists working to improve crop yields in dry environments.

PubMed

A toolkit for microbial community editing.

2022

Nature reviews. Microbiology

Tringe SG

PubMed

Metagenomes from Arctic Soil Microbial Communities from the Barrow Environmental Observatory, Utqiaġvik, AK, USA.

2022

Microbiology resource announcements

Taş N, Dafflon B, Ulrich C, Wu Y, Tringe SG +1 more

Plain English
This research examined soil samples from the Arctic tundra in Utqiaġvik, Alaska, focusing on 36 samples from the active layer of soil and 17 from permafrost to understand the tiny living organisms in these areas. The study revealed a diverse range of microbial communities that exist in these unique environments. This information is important because it helps us understand how Arctic ecosystems function, especially as climate change affects these regions. Who this helps: This helps researchers and environmental scientists studying climate change and Arctic ecology.

PubMed

High-Quality Draft Genome Sequence of Fischerella thermalis JSC-11, a Siderophilic Cyanobacterium with Bioremediation Potential.

2022

Microbiology resource announcements

Brown I, Woyke T, Ivanova N, Shapiro N, Alcorta J +4 more

Plain English
This study focused on a type of bacteria called Fischerella thermalis JSC-11, found in a hot spring rich in iron. Researchers sequenced its genome and discovered that it can absorb and break down iron, making it useful for cleaning up contaminated environments. Having this genetic information will help scientists investigate how to use this bacterium for environmental cleanup efforts. Who this helps: This benefits environmental scientists and organizations working on pollution cleanup.

PubMed

A genomic catalog of Earth's microbiomes.

2021

Nature biotechnology

Nayfach S, Roux S, Seshadri R, Udwary D, Varghese N +27 more

Plain English
Researchers studied over 10,000 samples of bacteria and archaea from various environments around the world, including human bodies, animals, engineered settings, and soils. They compiled a catalog containing 52,515 genomes and identified more than 12,500 new species, increasing our understanding of microbial diversity by 44%. This work is important because it provides valuable information about how these microorganisms interact with ecosystems and can lead to new insights in fields like medicine and agriculture. Who this helps: This benefits scientists, doctors, and anyone interested in understanding microbial roles in health and the environment.

PubMed

Publisher Correction: A genomic catalog of Earth's microbiomes.

2021

Nature biotechnology

Nayfach S, Roux S, Seshadri R, Udwary D, Varghese N +27 more

PubMed

Author Correction: Plant-microbiome interactions: from community assembly to plant health.

2021

Nature reviews. Microbiology

Trivedi P, Leach JE, Tringe SG, Sa T, Singh BK

PubMed

Pre-Cambrian roots of novel Antarctic cryptoendolithic bacterial lineages.

2021

Microbiome

Albanese D, Coleine C, Rota-Stabelli O, Onofri S, Tringe SG +3 more

Plain English
This study examined hidden bacteria living inside rocks in Antarctica, specifically in one of the driest places on Earth, to understand how these organisms survive in extreme conditions. Researchers discovered 497 bacterial genome sequences, identifying 269 new species, with the most common type being "Candidatus Jiangella antarctica," which shows a strong ability to thrive in harsh environments. These findings are important because they expand our knowledge of life in extreme conditions and may help in understanding similar environments, possibly even Mars. Who this helps: This helps scientists studying extremophiles and the potential for life on other planets.

PubMed

Microbial Community Field Surveys Reveal AbundantPopulation in Sorghum Rhizosphere Composed of Many Closely Related Phylotypes.

2021

Frontiers in microbiology

Chiniquy D, Barnes EM, Zhou J, Hartman K, Li X +7 more

Plain English
This study focused on the bacteria living around the roots of sorghum plants and how nitrogen fertilization affects these bacterial communities. The researchers found that when sorghum plants were grown in fields with nitrogen, the variety of bacteria present around the roots decreased significantly, with almost all the samples dominated by a single type of bacteria. Understanding these bacterial communities is important because they can influence plant health and productivity, potentially leading to better farming practices. Who this helps: Farmers and agricultural scientists looking to improve crop yields.

PubMed

Author Correction: A genomic catalog of Earth's microbiomes.

2021

Nature biotechnology

Nayfach S, Roux S, Seshadri R, Udwary D, Varghese N +27 more

PubMed

Different threats, same response.

2021

Nature plants

Cole BJ, Tringe SG

PubMed

High-Quality Draft Genome Sequence of the Siderophilic and ThermophilicCyanobacterium JSC-12.

2021

Microbiology resource announcements

Brown I, Tringe SG, Ivanova N, Goodwin L, Shapiro N +5 more

Plain English
This study focused on a type of bacteria called JSC-12, found in a hot spring, to understand how they survive in environments with high iron levels. The researchers completed a detailed genome sequence of this bacteria, which helps explain its ability to thrive under these extreme conditions. This understanding could lead to new technologies for cleaning up environments polluted with iron. Who this helps: This helps scientists and environmental engineers working on pollution cleanup strategies.

PubMed

Peatland microbial community responses to plant functional group and drought are depth-dependent.

2021

Molecular ecology

Lamit LJ, Romanowicz KJ, Potvin LR, Lennon JT, Tringe SG +4 more

Plain English
This study looked at how different types of plants and drought conditions affect tiny organisms in peatlands, which are vital for storing carbon and fighting climate change. Researchers found that both fungi and bacteria changed in response to these conditions, but fungi were more affected by the type of plant while bacteria were more influenced by water levels. The strongest changes happened in the upper layers of the peat, suggesting that both plant types and water availability play a key role in shaping these microbial communities deep below the surface. Who this helps: This research benefits environmental scientists and climate change researchers.

PubMed

Restoring wetlands on intensive agricultural lands modifies nitrogen cycling microbial communities and reduces NO production potential.

2021

Journal of environmental management

Kasak K, Espenberg M, Anthony TL, Tringe SG, Valach AC +8 more

Plain English
This study looked at how restoring wetlands on agricultural land affects the tiny organisms that manage nitrogen, an important element for plant growth. The researchers found that high-nitrogen areas, like busy cornfields, produced a lot of nitrous oxide (NO), a harmful greenhouse gas, while nearby restored wetlands had fewer of these bacteria and acted as a sink for NO. This is important because restoring wetlands could help reduce greenhouse gas emissions and improve environmental health. Who this helps: This benefits everyone, especially environmentalists and climate policy makers.

PubMed

The biogeographic differentiation of algal microbiomes in the upper ocean from pole to pole.

2021

Nature communications

Martin K, Schmidt K, Toseland A, Boulton CA, Barry K +28 more

Plain English
This research focused on how different environmental conditions between the poles and the equator affect the diversity and activity of microscopic algae and their associated microbes in the ocean. The study found that the main factor impacting this diversity is temperature: on average, algae and their microbes change significantly at around 14°C. This finding is important because as global temperatures rise due to climate change, these shifts in algal communities could have significant consequences for ocean ecosystems and carbon absorption. Who this helps: This helps scientists and environmental policymakers understand the impacts of climate change on marine life.

PubMed

Methanogenesis and Salt Tolerance Genes of a Novel Halophilic Methanosarcinaceae Metagenome-Assembled Genome from a Former Solar Saltern.

2021

Genes

Bueno de Mesquita CP, Zhou J, Theroux SM, Tringe SG

Plain English
This study examined a newly identified type of methane-producing microorganism found in very salty sediment from an abandoned salt production site. Researchers sequenced the genome of this microorganism, which is closely related to other known methane producers, and found that it plays an important role in producing methane in these salty environments. Notably, they found that this microorganism was more common in the salt site than in less salty wetlands, which produced much less methane overall. Who this helps: This research aids scientists studying methane emissions and their impact on climate change.

PubMed

Proteome specialization of anaerobic fungi during ruminal degradation of recalcitrant plant fiber.

2021

The ISME journal

Hagen LH, Brooke CG, Shaw CA, Norbeck AD, Piao H +15 more

Plain English
This study looked at how anaerobic fungi help break down tough plant fibers in the stomachs of cows. Researchers found that a large portion of the enzymes involved in this process came from fungi, especially those that target hard-to-digest cellulose. This is important because it shows that fungi play a key role in digestion alongside bacteria, potentially improving the efficiency of nutrient absorption in cows. Who this helps: This benefits farmers and livestock producers by enhancing animal nutrition and productivity.

PubMed

Niche differentiation is spatially and temporally regulated in the rhizosphere.

2020

The ISME journal

Nuccio EE, Starr E, Karaoz U, Brodie EL, Zhou J +6 more

Plain English
This study looked at how different groups of microorganisms in soil interact with plant roots and break down carbohydrates. Researchers found that these microbes specialize in processing different types of organic matter, like fresh roots and decaying material, with the most active decomposition happening in the area around the roots. Understanding these interactions is important because they play a significant role in soil health and carbon cycling, which affects overall ecosystem function. Who this helps: This helps farmers and scientists studying soil health and sustainable agriculture.

PubMed

Clades of huge phages from across Earth's ecosystems.

2020

Nature

Al-Shayeb B, Sachdeva R, Chen LX, Ward F, Munk P +40 more

Plain English
This study looked at giant viruses called bacteriophages that infect bacteria, focusing on their DNA and how it varies across different environments. Researchers found many of these phages have much larger genomes than usual, with one being the largest ever recorded at 735 kilobases. This matters because the unique characteristics of these phages could help us understand their roles in controlling bacterial populations and their interactions with various ecosystems. Who this helps: This research benefits scientists studying viruses, bacteria, and ecosystem health.

PubMed

Metagenomes in the Borderline Ecosystems of the Antarctic Cryptoendolithic Communities.

2020

Microbiology resource announcements

Coleine C, Albanese D, Onofri S, Tringe SG, Pennacchio C +3 more

Plain English
This study examined tiny living organisms that exist inside rocks in the icy deserts of Antarctica. Researchers collected genetic material from these organisms to learn more about their types, diversity, and how they survive in such harsh conditions. They found 18 different genetic profiles showing a rich variety of life, which helps us understand how life can thrive in extreme environments. Who this helps: This research benefits scientists studying extreme environments and microbial life.

PubMed

Geology and climate influence rhizobiome composition of the phenotypically diverse tropical tree Tabebuia heterophylla.

2020

PloS one

Ortiz Y, Restrepo C, Vilanova-Cuevas B, Santiago-Valentin E, Tringe SG +1 more

Plain English
This study investigated how the types of soil and climate affect the microbes living around the roots of the tropical tree Tabebuia heterophylla in Puerto Rico. Researchers found that specific types of bacteria were more common in different soils: volcanic soils had more Verrucomicrobia, karst soils had more nitrogen-fixing Proteobacteria, and serpentine soils had the most diverse microorganisms. These findings are important because they show that soil type and climate can greatly influence the health and traits of these trees, which could impact forest ecosystems and conservation efforts. Who this helps: This helps researchers, environmentalists, and conservationists working to protect tropical forests.

PubMed

Plant-microbiome interactions: from community assembly to plant health.

2020

Nature reviews. Microbiology

Trivedi P, Leach JE, Tringe SG, Sa T, Singh BK

Plain English
This research paper looks at the good bacteria and microbes that live on and inside plants and how they help plants grow, absorb nutrients, resist diseases, and cope with stress. Scientists found that these microorganisms work together in specific ways that benefit the plants. Understanding these relationships can lead to healthier plants, which is important for agriculture and food security. Who this helps: This research helps farmers and agricultural scientists improve plant health and crop yields.

PubMed

Emerging Trends in Biological Treatment of Wastewater From Unconventional Oil and Gas Extraction.

2020

Frontiers in microbiology

Acharya SM, Chakraborty R, Tringe SG

Plain English
This study looked at the wastewater produced during unconventional oil and gas extraction, which contains many harmful chemicals. Researchers found that many of these contaminants can be broken down by natural biological processes. This matters because using biological treatment can help clean this wastewater, making it safer for reuse and reducing the environmental impact. Who this helps: This helps energy companies and environmental regulators.

PubMed

Phototrophic Co-cultures From Extreme Environments: Community Structure and Potential Value for Fundamental and Applied Research.

2020

Frontiers in microbiology

Shaw C, Brooke C, Hawley E, Connolly MP, Garcia JA +8 more

Plain English
This study looked at cyanobacteria, a type of microorganism important for recycling carbon and nitrogen in the environment, using a collection of over 1,000 different photosynthetic co-cultures. Researchers found that these existing samples could help advance our understanding of how these microorganisms work together in complex systems, even without needing to go out into the field, which can be challenging due to situations like the COVID-19 pandemic. This is crucial because it could lead to new insights about ecosystems while saving time and money. Who this helps: This helps researchers studying ecosystems and environmental health.

PubMed

Structural dynamics and transcriptomic analysis of Dehalococcoides mccartyi within a TCE-Dechlorinating community in a completely mixed flow reactor.

2019

Water research

Mao X, Stenuit B, Tremblay J, Yu K, Tringe SG +1 more

Plain English
This study focused on a group of microorganisms that break down trichloroethene (TCE), a harmful chemical often found in industrial waste. Researchers found that about 85% of the TCE was converted into a less harmful substance, ethene, at a rate of 0.1 mmol per day, while minimal unwanted byproducts were generated. Understanding how these microbes work helps improve methods for cleaning up TCE pollution, which can protect the environment and public health. Who this helps: This benefits patients, communities near contaminated sites, and environmental scientists.

PubMed

Complete Genome Sequence ofsp. Strain 33MFTa1.1, Isolated fromRoots.

2019

Microbiology resource announcements

Langley S, Eng T, Wan KH, Herbert RA, Klein AP +6 more

Plain English
The study analyzed a specific strain of bacteria called sp. strain 33MFTa1.1, which was taken from plant roots to better understand how microbes and their host plants interact. Researchers mapped out its entire genetic material, including two chromosomes and a plasmid, totaling about 5.3 million base pairs. This discovery is important because it can help scientists learn more about how these microbes support plant health, potentially leading to better agricultural practices. Who this helps: This helps farmers and researchers working on improving crop health and sustainability.

PubMed

Metatranscriptomic Analyses of Diel Metabolic Functions During aBloom in Western Lake Erie (United States).

2019

Frontiers in microbiology

Davenport EJ, Neudeck MJ, Matson PG, Bullerjahn GS, Davis TW +10 more

Plain English
This study looked at how certain bacteria in Lake Erie change their activity between day and night during a harmful algae bloom. Researchers found that during the day, these bacteria were mostly active in processes like photosynthesis and nutrient uptake, while at night, they focused on different functions related to protein production. Understanding these patterns is important because they can help us manage water quality and prevent future crises like the one in Toledo in 2014. Who this helps: This helps patients who rely on safe drinking water and public health officials working on water quality issues.

PubMed

Interactions between plants and soil shaping the root microbiome under abiotic stress.

2019

The Biochemical journal

Hartman K, Tringe SG

Plain English
This study looked at how stress from conditions like flooding, drought, and nutrient shortages affects the tiny microorganisms that live on and around plant roots, known as the root microbiome. Researchers found that these stressful conditions not only change the types of microbes present but also how plants interact with soil, potentially affecting plant health. Understanding these interactions is important because it could help improve plant resilience in challenging environments, which is vital for food production. Who this helps: This helps farmers and agricultural scientists working to enhance crop resilience.

PubMed

A layered defense against plant pathogens.

2019

Science (New York, N.Y.)

Tringe SG

PubMed

Unusual Metabolism and Hypervariation in the Genome of a Gracilibacterium (BD1-5) from an Oil-Degrading Community.

2019

mBio

Sieber CMK, Paul BG, Castelle CJ, Hu P, Tringe SG +3 more

Plain English
This study focused on a specific type of bacteria called gracilibacterium (BD1-5) found in an oil-eating community from the Gulf of Mexico. Researchers discovered that this bacteria does not rely on typical sugar pathways for energy; instead, it gets its nutrients from breaking down compounds from other organisms, which is unusual. The findings help to better understand the unique metabolic processes of these bacteria, which may be important for bioremediation efforts in oil spill environments. Who this helps: This helps researchers and environmental scientists working on oil degradation and ecosystem recovery.

PubMed

Division of labor in honey bee gut microbiota for plant polysaccharide digestion.

2019

Proceedings of the National Academy of Sciences of the United States of America

Zheng H, Perreau J, Powell JE, Han B, Zhang Z +3 more

Plain English
This study looked at how different bacteria in honey bees' guts help them digest plant sugars. Researchers found that specific bacteria are key players in breaking down complex carbohydrates like hemicellulose and pectin, with honey bee bacteria having more genes for this task than bumble bee bacteria. These findings are important because they show that the types of bacteria in a bee's gut can affect its nutrition and overall health. Who this helps: This benefits beekeepers and researchers studying bee health and nutrition.

PubMed

Diversity, evolution, and classification of virophages uncovered through global metagenomics.

2019

Microbiome

Paez-Espino D, Zhou J, Roux S, Nayfach S, Pavlopoulos GA +8 more

Plain English
This study looked at a type of virus called virophages, which are known for co-infecting cells along with larger viruses. Researchers analyzed over 14,000 samples and discovered 44,221 sequences of virophages, significantly increasing the number of known virophage genomes by ten times. They organized these genomes into 27 distinct groups and identified some potential hosts for these viruses, which helps us understand where they come from and how they evolve. Who this helps: This benefits researchers studying viruses and the diseases they may cause.

PubMed

Publication data sourced from PubMed . Plain-English summaries generated by AI. Not medical advice.